Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   A7K98_RS01060 Genome accession   NZ_CP015579
Coordinates   196143..197576 (-) Length   477 a.a.
NCBI ID   WP_087486891.1    Uniprot ID   A0A1Y0LEN9
Organism   Tatumella citrea strain DSM 13699     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 191143..202576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7K98_RS01035 (A7K98_01025) mtgA 193273..193995 (+) 723 WP_087486887.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  A7K98_RS01040 (A7K98_01030) npr 194017..194289 (-) 273 WP_087486888.1 PTS phosphocarrier protein NPr -
  A7K98_RS01045 (A7K98_01035) rapZ 194286..195140 (-) 855 WP_087493466.1 RNase adapter RapZ -
  A7K98_RS01050 (A7K98_01040) ptsN 195180..195674 (-) 495 WP_087493467.1 PTS IIA-like nitrogen regulatory protein PtsN -
  A7K98_RS01055 (A7K98_01045) hpf 195835..196122 (-) 288 WP_087486890.1 ribosome hibernation promoting factor -
  A7K98_RS01060 (A7K98_01050) rpoN/rpoN1 196143..197576 (-) 1434 WP_087486891.1 RNA polymerase factor sigma-54 Machinery gene
  A7K98_RS01065 (A7K98_01055) lptB 197628..198353 (-) 726 WP_087486892.1 LPS export ABC transporter ATP-binding protein -
  A7K98_RS01070 (A7K98_01060) lptA 198359..198913 (-) 555 WP_087486893.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  A7K98_RS01075 (A7K98_01065) lptC 198888..199460 (-) 573 WP_087486894.1 LPS export ABC transporter periplasmic protein LptC -
  A7K98_RS01080 (A7K98_01070) kdsC 199457..200020 (-) 564 WP_087486895.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  A7K98_RS01085 (A7K98_01075) kdsD 200034..201020 (-) 987 WP_087486896.1 arabinose-5-phosphate isomerase KdsD -
  A7K98_RS01090 (A7K98_01080) - 201035..202015 (-) 981 WP_087486897.1 calcium/sodium antiporter -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 53806.53 Da        Isoelectric Point: 4.4260

>NTDB_id=181132 A7K98_RS01060 WP_087486891.1 196143..197576(-) (rpoN/rpoN1) [Tatumella citrea strain DSM 13699]
MKQSLQFRLSQQLAMTPQLQQAIRLLQLSTHELQQELQLALESNPLLEQTEVLNEVDSEESGETASLDTREALEQKDMPE
ELPLDATWDEIYTAGTPSGTGTDYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAIDNTGYLTVPLED
ILESIGDDELGIEEVEAVLKRVQHFDPIGVGARDLKDCLLVQLSQFSPDTPMLEEARLIVRQHLDLLANHDFRSLMRVTR
LKDDVLKDAMALIQSLDPRPGQSIHTGESEYVIPDVLVRKTGNQWTVELNTDSLPRLRINQHYAAMSGGARNDSDNQFIR
SNLQEARWLIKSLESRNDTLLRVTRCIVEQQQAFFEQGEEYMRPMVLADIAQSVDMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVSTEGGGEASSTAIRALVKKLISSENPGKPLSDSKLTSMLSEQGIMVARRTVAKYRESLSIPPSNQRKQLL

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=181132 A7K98_RS01060 WP_087486891.1 196143..197576(-) (rpoN/rpoN1) [Tatumella citrea strain DSM 13699]
ATGAAGCAAAGTTTGCAATTCAGGCTCAGCCAACAACTGGCAATGACCCCCCAGTTGCAGCAGGCGATACGACTGTTGCA
ACTTTCTACGCATGAATTACAGCAGGAACTGCAGCTGGCACTGGAAAGTAATCCGTTACTGGAACAGACCGAAGTTCTTA
ACGAAGTGGATTCTGAGGAGTCGGGTGAAACTGCATCTCTGGACACCCGTGAAGCATTAGAGCAGAAAGATATGCCGGAG
GAACTTCCTCTGGATGCCACCTGGGATGAAATATATACCGCCGGCACTCCATCCGGTACAGGTACTGATTATCAGGACGA
TGAACTACCTGTTTATCAGGGAGAAACCACCCAGTCACTGCAGGATTACCTGATGTGGCAGGTTGAACTGACCCCGTTCA
GTGATACTGACCGTGCGATTGCCACTTCGATAGTTGATGCTATTGATAATACCGGCTATCTCACTGTTCCCCTGGAAGAT
ATTCTGGAAAGTATCGGTGATGATGAACTGGGTATTGAAGAAGTTGAAGCTGTTCTGAAACGGGTACAGCATTTTGACCC
TATTGGTGTGGGTGCCCGCGATTTGAAAGACTGTCTGCTGGTACAGCTTTCTCAGTTCAGCCCGGACACACCGATGCTGG
AAGAAGCACGGTTAATTGTCCGGCAACACCTGGATCTGCTGGCTAATCACGATTTCCGTAGCCTGATGCGTGTCACCCGC
CTGAAAGATGATGTGCTCAAAGATGCAATGGCTCTGATTCAGTCACTGGACCCTCGTCCCGGACAATCCATCCATACCGG
TGAATCTGAATATGTAATCCCGGATGTGTTGGTGCGTAAAACCGGCAACCAGTGGACCGTCGAACTGAATACCGACAGTC
TGCCACGACTCCGTATTAATCAGCACTATGCCGCAATGAGTGGCGGAGCGCGCAACGACAGCGACAATCAGTTTATCCGC
AGTAATCTACAGGAAGCCCGCTGGCTGATTAAAAGCCTGGAAAGCCGAAATGATACTCTGTTGCGGGTTACCCGCTGTAT
TGTCGAACAACAGCAGGCCTTTTTTGAACAAGGCGAAGAATACATGCGGCCCATGGTACTGGCCGACATCGCTCAGTCAG
TCGATATGCATGAATCCACTATTTCGCGGGTGACAACCCAGAAATATCTGCACAGCCCGCGCGGCATCTTTGAACTAAAA
TATTTCTTCTCAAGCCATGTCAGCACCGAAGGCGGTGGGGAAGCCTCGTCAACGGCTATCCGGGCACTGGTCAAAAAATT
AATCTCATCGGAAAATCCGGGCAAACCCTTGAGTGACAGTAAACTCACCTCTATGTTATCTGAACAGGGGATTATGGTTG
CAAGACGTACTGTTGCCAAATATCGCGAGTCTTTATCTATCCCGCCATCAAACCAGCGTAAACAGCTGCTTTGA

Domains

Predicted by InterProScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.924

100

0.484

Multiple sequence alignment