Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CHL_RS05995 Genome accession   NZ_CP015576
Coordinates   1118948..1120291 (+) Length   447 a.a.
NCBI ID   WP_063998428.1    Uniprot ID   -
Organism   Campylobacter hyointestinalis subsp. lawsonii CCUG 27631     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1113948..1125291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHL_RS05965 (CHL_1205) - 1114191..1114754 (-) 564 WP_063998423.1 DedA family protein -
  CHL_RS05970 (CHL_1206) - 1114763..1115356 (-) 594 WP_063998424.1 lipid-binding SYLF domain-containing protein -
  CHL_RS05975 (CHL_1207) rny 1115366..1116919 (-) 1554 WP_059426778.1 ribonuclease Y -
  CHL_RS05980 (CHL_1208) - 1116852..1117481 (-) 630 WP_063998425.1 5-formyltetrahydrofolate cyclo-ligase -
  CHL_RS05985 (CHL_1209) - 1117532..1118077 (+) 546 WP_063998426.1 TlpA family protein disulfide reductase -
  CHL_RS05990 (CHL_1210) ftsY 1118077..1118961 (+) 885 WP_063998427.1 signal recognition particle-docking protein FtsY -
  CHL_RS05995 (CHL_1211) radA 1118948..1120291 (+) 1344 WP_063998428.1 DNA repair protein RadA Machinery gene
  CHL_RS06000 (CHL_1212) - 1121022..1122017 (-) 996 WP_063998429.1 sensor histidine kinase -
  CHL_RS06005 (CHL_1213) - 1122005..1122856 (-) 852 WP_235598045.1 DUF234 domain-containing protein -
  CHL_RS06010 (CHL_1214) - 1122937..1124208 (+) 1272 WP_063998430.1 aminotransferase class V-fold PLP-dependent enzyme -
  CHL_RS06015 (CHL_1215) - 1124218..1124994 (-) 777 WP_063998431.1 undecaprenyl-diphosphate phosphatase -

Sequence

Protein


Download         Length: 447 a.a.        Molecular weight: 49044.76 Da        Isoelectric Point: 7.1363

>NTDB_id=181104 CHL_RS05995 WP_063998428.1 1118948..1120291(+) (radA) [Campylobacter hyointestinalis subsp. lawsonii CCUG 27631]
MAKTKTIFECEACGNQQSKWMGKCPGCGAWESFVELSSEQIKVINEISKISNSPSSKAKVITDIKIEEIPRRTTGDVELD
IVLGGGLVDGSLVLIGGSPGIGKSTLLLKIASNLAEFGESVLYVSGEESESQIKLRANRLNANSKNLYLLTEINLDNILA
EISKKEYKTLVVDSIQTLYSDKISSAPGSVSQVREITFELMRLAKSKNICVFIIGHITKEGSIAGPRILEHMVDVVLYFE
GDSSMELRLLRGFKNRFGSTSEVGIFEMSKFGLISAKDATSKFFTRGDAVSGSAITVTMEGSRALIVEIQALVCESSYPK
RSSTGFDKNRLDMILALLERKLEIPLGHYDVFINVTGGVKINETACDLAVVAAIISSFRNRPISKESIFIGELSLNGEIR
DIFNLDARLKEASMQKFKNIIAPSKPIEKSNLKIFVAKEISQVIEWM

Nucleotide


Download         Length: 1344 bp        

>NTDB_id=181104 CHL_RS05995 WP_063998428.1 1118948..1120291(+) (radA) [Campylobacter hyointestinalis subsp. lawsonii CCUG 27631]
ATGGCAAAAACTAAAACTATATTTGAGTGCGAAGCTTGTGGAAATCAACAGAGCAAATGGATGGGCAAATGTCCTGGATG
CGGGGCTTGGGAAAGCTTTGTGGAGCTTAGTAGTGAGCAGATAAAAGTCATCAATGAAATCTCAAAGATAAGTAACTCTC
CTTCATCAAAAGCAAAAGTCATAACTGATATAAAAATAGAAGAAATTCCACGTCGCACTACAGGAGATGTTGAGCTTGAT
ATCGTTCTTGGTGGCGGCTTAGTAGATGGCTCACTTGTGCTTATCGGGGGAAGTCCTGGCATCGGAAAATCAACACTGCT
TTTAAAAATCGCTTCAAATTTGGCCGAATTTGGTGAAAGTGTTTTATACGTAAGTGGGGAAGAAAGCGAGTCTCAAATAA
AGCTACGCGCAAACAGACTAAATGCGAACAGCAAAAATCTATATCTTTTAACAGAGATAAACTTAGACAATATCCTAGCA
GAAATCTCGAAAAAAGAGTATAAAACGCTAGTAGTGGATTCTATACAAACATTATATAGTGATAAAATAAGCTCAGCTCC
TGGTTCAGTTTCGCAAGTAAGAGAGATAACTTTTGAGCTGATGAGACTTGCAAAAAGTAAAAATATATGCGTGTTTATCA
TCGGACATATCACAAAAGAAGGCTCTATTGCTGGACCTAGAATTTTAGAGCATATGGTTGATGTCGTGCTGTATTTTGAA
GGCGATAGCAGTATGGAGCTCAGGCTTCTTAGAGGATTTAAAAATCGCTTTGGCTCAACTAGTGAAGTTGGGATTTTTGA
AATGAGCAAATTTGGTCTGATCAGTGCAAAAGACGCTACTAGCAAATTTTTTACTAGAGGAGATGCAGTGAGTGGCTCAG
CCATAACAGTCACGATGGAAGGAAGTCGCGCGCTTATAGTAGAGATACAAGCTCTAGTTTGCGAGAGTAGCTATCCAAAA
AGAAGTTCAACCGGATTTGATAAAAATCGTCTAGATATGATACTTGCTTTATTAGAGCGAAAGCTTGAAATTCCCTTGGG
GCATTATGACGTTTTTATAAATGTTACTGGCGGAGTAAAGATAAATGAGACCGCATGCGATCTAGCTGTTGTAGCAGCCA
TCATATCGAGCTTTAGAAATCGCCCTATCAGCAAAGAAAGCATCTTTATAGGTGAGCTTAGCTTAAACGGAGAAATCAGA
GATATATTTAACCTTGATGCAAGGCTAAAAGAAGCTAGTATGCAAAAATTTAAAAATATAATAGCACCGAGCAAACCGAT
AGAAAAATCAAATTTAAAGATATTTGTAGCAAAAGAAATTTCACAAGTTATTGAATGGATGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-424)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(83-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.812

96.421

0.49
  radA Streptococcus pneumoniae Rx1

47.241

100

0.479
  radA Streptococcus pneumoniae D39

47.241

100

0.479
  radA Streptococcus pneumoniae R6

47.241

100

0.479
  radA Streptococcus pneumoniae TIGR4

47.241

100

0.479
  radA Streptococcus mitis SK321

47.685

96.644

0.461
  radA Streptococcus mitis NCTC 12261

47.454

96.644

0.459

Multiple sequence alignment