Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CHH_RS05995 Genome accession   NZ_CP015575
Coordinates   1154249..1155592 (+) Length   447 a.a.
NCBI ID   WP_059427780.1    Uniprot ID   -
Organism   Campylobacter hyointestinalis subsp. hyointestinalis LMG 9260     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1149249..1160592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHH_RS05965 (CHH_1202) - 1149492..1150055 (-) 564 WP_034963891.1 DedA family protein -
  CHH_RS05970 (CHH_1203) - 1150064..1150657 (-) 594 WP_034963889.1 lipid-binding SYLF domain-containing protein -
  CHH_RS05975 (CHH_1204) rny 1150667..1152220 (-) 1554 WP_034963887.1 ribonuclease Y -
  CHH_RS05980 (CHH_1205) - 1152141..1152782 (-) 642 WP_034963885.1 5-formyltetrahydrofolate cyclo-ligase -
  CHH_RS05985 (CHH_1206) - 1152833..1153378 (+) 546 WP_034963884.1 TlpA family protein disulfide reductase -
  CHH_RS05990 (CHH_1207) ftsY 1153378..1154262 (+) 885 WP_059427779.1 signal recognition particle-docking protein FtsY -
  CHH_RS05995 (CHH_1208) radA 1154249..1155592 (+) 1344 WP_059427780.1 DNA repair protein RadA Machinery gene
  CHH_RS09615 - 1156087..1156212 (-) 126 WP_255199053.1 hypothetical protein -

Sequence

Protein


Download         Length: 447 a.a.        Molecular weight: 49006.67 Da        Isoelectric Point: 7.1363

>NTDB_id=181091 CHH_RS05995 WP_059427780.1 1154249..1155592(+) (radA) [Campylobacter hyointestinalis subsp. hyointestinalis LMG 9260]
MAKTKTIFECEACGNQQSKWMGKCPGCGAWESFVELSSEQIKVINEISKISSSPSSKAKAITDIKIEEISRRTTGDVELD
IVLGGGLVDGSLVLIGGSPGIGKSTLLLKIASNLAEFGENVLYVSGEESESQIKLRANRLNANSKNLYLLTEINLDNILA
EISKKEYKTLVVDSIQTLYSDKISSAPGSVSQVREITFELMRLAKSKNICVFIIGHITKEGSIAGPRILEHMVDVVLYFE
GDSSMELRLLRGFKNRFGSTSEVGIFEMSKFGLISAKDATSKFFTRGDAVSGSAITVTMEGSRALIVEIQALVCESSYPK
RSSTGFDKNRLDMILALLERKLEIPLGHYDVFINVTGGVKINETACDLAVVAAIISSFRNRPISKESIFIGELSLNGEIR
DIFNLDARLKEASMQKFKNIIAPSKPIEKSNLKIFVAKEISQVIEWM

Nucleotide


Download         Length: 1344 bp        

>NTDB_id=181091 CHH_RS05995 WP_059427780.1 1154249..1155592(+) (radA) [Campylobacter hyointestinalis subsp. hyointestinalis LMG 9260]
ATGGCAAAAACTAAAACTATATTTGAGTGTGAAGCTTGCGGAAATCAACAGAGCAAATGGATGGGCAAATGTCCTGGATG
CGGGGCTTGGGAAAGCTTTGTGGAGCTTAGTAGCGAACAGATAAAAGTCATCAATGAAATCTCAAAGATAAGTAGCTCTC
CTTCATCAAAAGCAAAAGCTATAACTGATATAAAAATAGAAGAAATTTCACGCCGCACTACAGGAGACGTTGAGCTTGAT
ATCGTTCTTGGCGGAGGCTTGGTAGATGGCTCACTTGTGCTTATCGGCGGAAGTCCAGGCATCGGAAAATCAACACTGCT
TTTAAAAATCGCTTCAAATTTGGCCGAATTTGGTGAAAATGTTTTATACGTAAGCGGGGAAGAAAGTGAGTCTCAAATAA
AGCTACGTGCAAACAGACTAAATGCGAACAGCAAAAATCTATATCTTTTAACAGAGATAAATTTAGACAATATCCTAGCA
GAAATCTCGAAAAAAGAGTATAAAACGCTAGTAGTGGATTCTATACAAACATTATATAGCGATAAAATAAGCTCAGCTCC
TGGTTCAGTTTCGCAAGTACGCGAGATAACTTTTGAGCTGATGAGGCTTGCAAAAAGTAAAAATATATGCGTGTTCATCA
TCGGACATATCACAAAAGAAGGCTCTATCGCCGGACCTAGAATTTTAGAGCATATGGTTGATGTCGTGCTGTATTTTGAA
GGCGATAGCAGTATGGAGCTCAGGCTTCTTAGGGGATTTAAAAATCGCTTTGGCTCAACTAGTGAAGTTGGGATTTTTGA
AATGAGCAAATTCGGTCTGATAAGCGCAAAAGACGCTACTAGCAAATTTTTTACTAGAGGAGACGCAGTGAGTGGCTCAG
CCATAACAGTCACGATGGAAGGAAGCCGCGCGCTTATAGTAGAGATCCAAGCTCTAGTTTGCGAGAGTAGCTATCCAAAA
AGAAGTTCCACTGGATTTGATAAAAATCGTCTGGATATGATACTTGCTTTATTGGAGCGAAAGCTTGAAATTCCCTTGGG
GCATTATGACGTTTTTATAAATGTTACTGGCGGAGTAAAGATAAATGAGACCGCATGCGATCTAGCTGTTGTAGCAGCTA
TCATATCGAGCTTTAGAAATCGCCCTATCAGCAAAGAAAGCATCTTTATAGGTGAGCTTAGCTTAAACGGAGAAATCAGA
GATATATTTAACCTTGATGCAAGGCTAAAAGAAGCCAGTATGCAAAAATTTAAAAATATAATAGCACCGAGCAAACCGAT
AGAAAAATCAAATTTAAAGATATTCGTCGCAAAAGAAATTTCACAAGTGATTGAATGGATGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-424)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(83-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.348

96.421

0.485
  radA Streptococcus pneumoniae Rx1

46.756

100

0.468
  radA Streptococcus pneumoniae D39

46.756

100

0.468
  radA Streptococcus pneumoniae R6

46.756

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.756

100

0.468
  radA Streptococcus mitis SK321

47.183

95.302

0.45
  radA Streptococcus mitis NCTC 12261

46.948

95.302

0.447

Multiple sequence alignment