Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CHH_RS03145 Genome accession   NZ_CP015575
Coordinates   589905..590279 (+) Length   124 a.a.
NCBI ID   WP_034962678.1    Uniprot ID   -
Organism   Campylobacter hyointestinalis subsp. hyointestinalis LMG 9260     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 584905..595279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHH_RS03125 (CHH_0632) - 586015..586827 (-) 813 WP_064019690.1 HDOD domain-containing protein -
  CHH_RS03130 (CHH_0633) ilvC 586977..587999 (+) 1023 WP_059425201.1 ketol-acid reductoisomerase -
  CHH_RS03135 (CHH_0634) - 588000..589151 (+) 1152 WP_064019691.1 divergent polysaccharide deacetylase family protein -
  CHH_RS03140 (CHH_0635) dprA 589135..589908 (+) 774 WP_034962677.1 DNA-processing protein DprA Machinery gene
  CHH_RS03145 (CHH_0636) dprB 589905..590279 (+) 375 WP_034962678.1 Holliday junction resolvase RuvX Machinery gene
  CHH_RS03150 (CHH_0637) - 590281..591150 (+) 870 WP_051663748.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CHH_RS03155 (CHH_0638) - 591147..592319 (-) 1173 WP_051663749.1 hypothetical protein -
  CHH_RS03160 (CHH_0639) queA 592329..593351 (-) 1023 WP_370510320.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CHH_RS03165 (CHH_0640) tatC 593344..594102 (-) 759 WP_034962680.1 twin-arginine translocase subunit TatC -
  CHH_RS03170 (CHH_0641) tatB 594102..594539 (-) 438 WP_059425209.1 Sec-independent protein translocase protein TatB -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13733.19 Da        Isoelectric Point: 10.1510

>NTDB_id=181088 CHH_RS03145 WP_034962678.1 589905..590279(+) (dprB) [Campylobacter hyointestinalis subsp. hyointestinalis LMG 9260]
MIVAIDVGLKRIGVAFAPNKVLVLPSEPILRKNRVQAANDTLKMLKEKNAKTLVVGLPKGGSSEDEMQRRIKHFISLVGF
DGEIIYQDEAYSSFEASALVKDKRDGKFDSIAAMIILKRYLGIL

Nucleotide


Download         Length: 375 bp        

>NTDB_id=181088 CHH_RS03145 WP_034962678.1 589905..590279(+) (dprB) [Campylobacter hyointestinalis subsp. hyointestinalis LMG 9260]
ATGATAGTCGCGATAGACGTTGGCTTAAAAAGAATAGGAGTCGCTTTTGCTCCTAACAAAGTTCTAGTTTTACCTAGTGA
GCCGATACTTCGTAAAAATCGTGTTCAAGCAGCAAATGACACTCTAAAAATGCTAAAAGAAAAAAACGCCAAAACGCTTG
TAGTGGGGCTTCCAAAAGGAGGATCTAGCGAAGATGAAATGCAAAGAAGAATAAAGCATTTTATATCGCTTGTTGGATTT
GATGGGGAGATAATATATCAAGATGAAGCGTATTCGAGTTTTGAAGCAAGTGCTTTGGTAAAAGATAAAAGAGACGGTAA
ATTTGATAGTATTGCCGCGATGATAATACTAAAAAGATATTTAGGGATTTTATAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

48.462

100

0.508

Multiple sequence alignment