Detailed information NTG0181084

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: CHH_RS01740
• Genome accession: NZ_CP015575
• Coordinates: 319920..320864 (-)
• Length: 314 a.a.
• NCBI ID: WP_034962340.1
• Uniprot ID: A0A855NA17
• Organism: Campylobacter hyointestinalis subsp. hyointestinalis LMG 9260
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 314920..325864

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CHH_RS01705 (CHH_0344)	ccoS	315356..315586 (+)	231	WP_059443068.1	cbb3-type cytochrome oxidase assembly protein CcoS	-
CHH_RS01710 (CHH_0345)	-	315640..315954 (-)	315	WP_059425919.1	c-type cytochrome	-
CHH_RS01715 (CHH_0346)	-	316093..316407 (-)	315	WP_034962350.1	c-type cytochrome	-
CHH_RS01720 (CHH_0347)	gmhB	316548..317054 (+)	507	WP_051663733.1	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	-
CHH_RS01725 (CHH_0348)	rfaD	317051..318019 (+)	969	WP_034962346.1	ADP-glyceromanno-heptose 6-epimerase	-
CHH_RS01730 (CHH_0349)	rfaE1	318012..319388 (+)	1377	WP_034962344.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
CHH_RS01735 (CHH_0350)	gmhA	319391..319954 (+)	564	WP_034962342.1	D-sedoheptulose 7-phosphate isomerase	-
CHH_RS01740 (CHH_0351)	waaF	319920..320864 (-)	945	WP_034962340.1	lipopolysaccharide heptosyltransferase II	Regulator
CHH_RS01745 (CHH_0352)	-	320848..321879 (-)	1032	WP_034962339.1	glycosyltransferase family 4 protein	-
CHH_RS01750 (CHH_0353)	-	321961..323262 (+)	1302	WP_064019631.1	O-antigen ligase family protein	-
CHH_RS01755 (CHH_0354)	-	323237..324157 (+)	921	WP_034962333.1	glycosyltransferase family 9 protein	-
CHH_RS01760 (CHH_0355)	-	324154..325209 (+)	1056	WP_034962330.1	glycosyltransferase family 4 protein	-

Sequence

Protein

• Length: 314 a.a.
• Molecular weight: 35746.89 Da
• Isoelectric Point: 9.4464

>NTDB_id=181084 CHH_RS01740 WP_034962340.1 319920..320864(-) (waaF) [Campylobacter hyointestinalis subsp. hyointestinalis LMG 9260]
MRILIELPTWLGDAVMASAAVQSLALNYPNCKITFFGSEISTSIYSSYPNCENIIIDNSKKAKFRLFYLLKTALNLDKFD
IAVSFRSHFYSKVFFKFIKADKKAIFTPTKNEIHQVQKYMNFIINCLSLKQSIDELKLYFAPFKFKNKTLGLNPGASYGS
AKRWYPQYFANVAINLKKSYEVVIFGGKNEQNICDEIALELEKNGVKYQNLCNKTTICELASFIAGLDMFITNDSGPMHI
AATFKVPTIALFGPTKFKETSPYKNNNAKILHLDLDCMPCMKRVCPLNSHECMKNLTPKMVLDAIYKLNPQLDK

Nucleotide

• Length: 945 bp

>NTDB_id=181084 CHH_RS01740 WP_034962340.1 319920..320864(-) (waaF) [Campylobacter hyointestinalis subsp. hyointestinalis LMG 9260]
ATGCGCATACTAATTGAGCTGCCCACATGGCTAGGTGACGCCGTGATGGCAAGCGCTGCTGTTCAAAGTCTAGCCCTAAA
CTATCCAAACTGTAAGATAACCTTTTTTGGATCAGAGATTAGCACGAGTATCTACAGCTCTTATCCAAACTGTGAAAATA
TCATTATCGATAATTCGAAAAAAGCTAAGTTCAGACTGTTTTATCTGCTAAAAACAGCTTTAAATTTAGATAAATTTGAT
ATAGCCGTAAGTTTTAGAAGTCACTTTTACTCAAAAGTATTTTTTAAATTTATAAAAGCAGACAAAAAAGCTATTTTTAC
ACCTACAAAAAACGAAATTCATCAGGTACAAAAATATATGAATTTTATTATCAATTGTCTGAGTTTAAAACAAAGCATAG
ATGAGCTAAAATTGTATTTTGCTCCTTTTAAATTTAAAAACAAAACTCTAGGGCTAAATCCAGGAGCAAGCTACGGAAGT
GCGAAAAGATGGTATCCGCAATATTTTGCAAACGTAGCTATAAATTTAAAAAAGAGTTATGAAGTTGTCATTTTTGGAGG
AAAAAATGAACAAAATATCTGCGACGAAATAGCATTAGAACTTGAAAAAAACGGAGTAAAATACCAAAATTTATGTAACA
AAACCACTATTTGTGAGCTAGCAAGCTTTATAGCAGGTCTTGATATGTTTATCACTAACGATAGCGGTCCTATGCACATA
GCAGCAACTTTTAAAGTGCCTACTATAGCACTTTTTGGACCTACTAAGTTCAAAGAAACCTCTCCATATAAAAATAACAA
TGCAAAGATACTACATCTTGATTTAGACTGTATGCCCTGTATGAAGAGAGTTTGTCCTTTGAACTCACACGAATGTATGA
AAAATCTAACACCAAAAATGGTGCTAGATGCTATTTATAAGCTAAATCCACAGCTTGACAAATAG

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (137-288)

3D structure

• AlphaFold DB: A0A855NA17

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	48.243	99.682	0.481