Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   BWR56_RS09670 Genome accession   NZ_CP019562
Coordinates   1937385..1938155 (-) Length   256 a.a.
NCBI ID   WP_000616142.1    Uniprot ID   A0ABU5G4C8
Organism   Streptococcus oralis strain S.MIT/ORALIS-351     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1932385..1943155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWR56_RS09630 (BWR56_1906) - 1934385..1934579 (-) 195 WP_049506282.1 hypothetical protein -
  BWR56_RS10030 - 1934905..1935072 (-) 168 WP_231071383.1 bacteriocin immunity protein -
  BWR56_RS09645 (BWR56_1907) - 1935139..1935327 (-) 189 WP_000722238.1 hypothetical protein -
  BWR56_RS09650 (BWR56_1908) - 1935337..1935504 (-) 168 WP_000415691.1 bacteriocin -
  BWR56_RS09655 (BWR56_1909) - 1935522..1935710 (-) 189 WP_049506287.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  BWR56_RS09660 (BWR56_1910) - 1936154..1936390 (-) 237 WP_000136435.1 acyl carrier protein -
  BWR56_RS09665 (BWR56_1911) plsX 1936396..1937388 (-) 993 WP_049506288.1 phosphate acyltransferase PlsX -
  BWR56_RS09670 (BWR56_1912) recO 1937385..1938155 (-) 771 WP_000616142.1 DNA repair protein RecO Machinery gene
  BWR56_RS09675 (BWR56_1913) - 1938152..1939321 (-) 1170 WP_076984872.1 pyridoxal phosphate-dependent aminotransferase -
  BWR56_RS09680 (BWR56_1914) - 1939473..1940483 (+) 1011 WP_076984873.1 YeiH family protein -
  BWR56_RS09685 (BWR56_1915) - 1940512..1940949 (-) 438 WP_076984874.1 CoA-binding protein -
  BWR56_RS09690 (BWR56_1916) - 1941069..1942037 (-) 969 WP_076984875.1 ribose-phosphate diphosphokinase -
  BWR56_RS09695 (BWR56_1917) - 1942252..1942746 (-) 495 WP_002876632.1 beta-class carbonic anhydrase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29821.28 Da        Isoelectric Point: 5.1808

>NTDB_id=180997 BWR56_RS09670 WP_000616142.1 1937385..1938155(-) (recO) [Streptococcus oralis strain S.MIT/ORALIS-351]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLRKTLELMEAGIDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKAEIKQELRKFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEDK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=180997 BWR56_RS09670 WP_000616142.1 1937385..1938155(-) (recO) [Streptococcus oralis strain S.MIT/ORALIS-351]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTCTACAATCGTAACTTTCGTGAAGATGACAAGCTAGTCAAGATCTT
TACCGAGCAGGCGGGCAAGCGCATGTTTTTCGTCAAACACGCTGGCCAGTCCAAACTAGCTCCGGTTATTCAGCCCTTGG
TGTTGGCACGATTTCTCTTGCGAATCAATGATGATGGGCTTAGCTACATTGAGGACTATCACGAGGTGATGACCTTTCCC
AAGATTAATAGTGATCTCTTTGTCATGGCCTATGCAACCTATGTGGCTGCCCTTGCAGATGCTAGTTTGCAGGATAATCA
GCAGGATGCTCCCTTGTTTGCTTTCTTGAGGAAGACTCTGGAGTTGATGGAAGCAGGGATAGATTATCAGGTTTTAACCA
ATATTTTTGAAATTCAAATCTTGACTCGATTTGGAATCAGCCTTAATTTTAATGAGTGTGTCTTTTGCCATCGGGTCGGT
CAGGCCTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGCCCAGAGCATTATCATGAGGATGAGAGACGTTGTCATCT
AAATCCCAATATCCCTTATCTGCTCAATCAATTTCAAGCCATTGATTTTGAAACCTTGGAGACCATTTCGCTTAAGGCCG
AAATCAAGCAAGAGCTACGCAAGTTTATGGATCAACTCTACGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATCGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAGACAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

96.875

100

0.969

Multiple sequence alignment