Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BWR56_RS05295 Genome accession   NZ_CP019562
Coordinates   1091094..1092761 (-) Length   555 a.a.
NCBI ID   WP_049505910.1    Uniprot ID   -
Organism   Streptococcus oralis strain S.MIT/ORALIS-351     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1086094..1097761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWR56_RS05275 (BWR56_1046) dprA/cilB/dalA 1086770..1087618 (-) 849 WP_000705328.1 DNA-processing protein DprA Machinery gene
  BWR56_RS05280 (BWR56_1047) - 1087699..1088322 (-) 624 WP_000734769.1 hypothetical protein -
  BWR56_RS05285 (BWR56_1048) lepA 1088463..1090286 (-) 1824 WP_049505907.1 translation elongation factor 4 -
  BWR56_RS05290 (BWR56_1049) - 1090365..1091093 (-) 729 WP_049505909.1 metallophosphoesterase family protein -
  BWR56_RS05295 (BWR56_1050) recN 1091094..1092761 (-) 1668 WP_049505910.1 DNA repair protein RecN Machinery gene
  BWR56_RS05300 (BWR56_1051) - 1092768..1093199 (-) 432 WP_001034394.1 arginine repressor -
  BWR56_RS05305 (BWR56_1052) - 1093192..1094007 (-) 816 WP_076984588.1 TlyA family RNA methyltransferase -
  BWR56_RS05310 (BWR56_1053) - 1094000..1094875 (-) 876 WP_076984589.1 polyprenyl synthetase family protein -
  BWR56_RS05315 (BWR56_1054) - 1094872..1095084 (-) 213 WP_076984590.1 exodeoxyribonuclease VII small subunit -
  BWR56_RS05320 (BWR56_1055) xseA 1095062..1096402 (-) 1341 WP_076984591.1 exodeoxyribonuclease VII large subunit -
  BWR56_RS05325 (BWR56_1056) udk 1096531..1097169 (-) 639 WP_042902181.1 uridine kinase -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62706.12 Da        Isoelectric Point: 4.5289

>NTDB_id=180957 BWR56_RS05295 WP_049505910.1 1091094..1092761(-) (recN) [Streptococcus oralis strain S.MIT/ORALIS-351]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNLMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQELF
DEQGLEMGDEIIIRREILQNGRSVSRVNGQMVNLSVLRAIGQHLVDIHGQHDQEELMRPQLHIQMLDEFGDAAFLDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNEE
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDITKRLEDIIEDLDFDGNRLMQVENRLDLINTITRKYGGTV
DDVLLYFAKITDEYNLLTGNNLSSEDMEAELKKLEVNLVDLAGQLASARHDLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSTVRLLTLEERVEEVAKMLAGENVTEAALTQARELLQTRMK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=180957 BWR56_RS05295 WP_049505910.1 1091094..1092761(-) (recN) [Streptococcus oralis strain S.MIT/ORALIS-351]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCGATTTCCCTCAATTTTGAAAAGGGTATGACTGTTTT
AACCGGGGAAACGGGTGCTGGAAAGTCTATCATTATCGACGCTATGAATCTCATGTTGGGGGCTCGTGCAACGACAGACG
TTATTCGTCACGGTGCGCCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAAAATAGTCGCCTTTTACAGGAACTTTTT
GATGAGCAAGGTTTGGAAATGGGTGATGAAATTATCATCCGGCGTGAAATTCTGCAAAATGGTCGTAGTGTTAGTCGCGT
GAATGGCCAGATGGTCAATCTTTCTGTCTTGCGTGCTATTGGGCAACACCTTGTGGATATCCATGGTCAGCATGACCAAG
AAGAGTTAATGCGTCCTCAACTGCATATCCAGATGTTGGATGAGTTTGGTGATGCTGCTTTCTTGGACTTGAAGGAGACC
TATCAGACGAGCTTTGATGCCTATCGCAAAATGCGTAAGCAGGTTTTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
TCGTATTGAGATGTTGGAATTTCAAATGGCAGAGATTGAGGCTGCAAACTTGCAGGCTGGTGAAGACTTAGCTCTCAACC
AAGAACGTGATAAACTTCTCAACCATAAAAATATTGCAGATACCCTAACCAATGCCTATAGTATGTTGGACAATGAGGAA
TTCTCCAGTCTTGCTAATGTCCGTTCAGCCATGAATGACATGGAAAGTGTCGAAGAATATGACCCTGAATACCGTGAAAT
TTCAAGTTCTCTATCCGAAACATACTATGTTTTAGAAGATATTACCAAGCGTTTAGAAGATATTATTGAGGACTTGGATT
TTGATGGCAATCGCCTCATGCAGGTTGAAAATCGCTTAGACCTTATAAATACTATTACTCGCAAGTACGGTGGGACTGTA
GACGATGTTTTGCTTTATTTTGCTAAGATTACGGATGAGTACAATCTCTTGACTGGAAATAACCTTTCTTCTGAAGACAT
GGAAGCAGAGCTCAAGAAATTGGAAGTTAATCTTGTCGATTTGGCAGGGCAACTTGCATCAGCTCGTCATGATTTGGCCC
AGCAGCTTGAGGCTGAGATTAAACAAGAACTTCAGGATCTCTATATGGAGAAGGCACAGTTCCAGGTTCGCTTTAGCAAG
GGCAAATTTAGTCGTGAGGGGAATGAAACAGTCGAGTTTTATATTTCCACCAACCCAGGTGAGGACTTTAAGCCTTTGGT
CAAAGTTGCGTCCGGTGGGGAATTATCCCGTCTCATGTTGGCTATCAAGTCTGCCTTTTCTCGTAAGGAAGGCAAGACCA
GTATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTAGCCCAGGCCATTGCTCAAAAAATTCATAAGATTGGC
CAGCATGGTCAGGTTCTTGCTATCTCTCACCTTCCACAAGTGATTGCCATCGCGGATTATCAATTCTTTATTGAGAAGAT
TAGCGATGAGCACTCAACGGTGTCGACGGTTCGCCTTTTGACTTTAGAAGAGCGAGTAGAGGAAGTAGCTAAGATGTTGG
CTGGGGAAAATGTAACTGAAGCTGCCCTTACCCAAGCCAGAGAATTATTGCAAACGAGGATGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.31

100

0.443