Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   BWR56_RS02365 Genome accession   NZ_CP019562
Coordinates   500651..502876 (+) Length   741 a.a.
NCBI ID   WP_196769368.1    Uniprot ID   -
Organism   Streptococcus oralis strain S.MIT/ORALIS-351     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 495651..507876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWR56_RS02335 (BWR56_0456) - 496060..496497 (+) 438 WP_049505257.1 Rrf2 family transcriptional regulator -
  BWR56_RS02340 (BWR56_0457) - 496640..497422 (-) 783 WP_071851460.1 DUF4037 domain-containing protein -
  BWR56_RS02345 (BWR56_0458) - 497551..498210 (-) 660 WP_049505256.1 amino acid ABC transporter permease -
  BWR56_RS02350 (BWR56_0459) - 498220..498897 (-) 678 WP_049505255.1 amino acid ABC transporter permease -
  BWR56_RS02355 (BWR56_0460) - 498910..499704 (-) 795 WP_049505254.1 transporter substrate-binding domain-containing protein -
  BWR56_RS02360 (BWR56_0461) - 499715..500473 (-) 759 WP_049505253.1 amino acid ABC transporter ATP-binding protein -
  BWR56_RS02365 (BWR56_0462) recJ 500651..502876 (+) 2226 WP_196769368.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  BWR56_RS02370 (BWR56_0463) - 503011..503295 (+) 285 WP_049505252.1 DUF2695 domain-containing protein -
  BWR56_RS02375 (BWR56_0464) - 503520..505181 (+) 1662 WP_049505251.1 ribonuclease J -
  BWR56_RS02380 (BWR56_0465) - 505250..506029 (+) 780 WP_076984384.1 alpha/beta hydrolase -
  BWR56_RS02385 (BWR56_0466) - 506134..506835 (+) 702 WP_076984385.1 M57 family metalloprotease -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 82696.37 Da        Isoelectric Point: 4.3320

>NTDB_id=180928 BWR56_RS02365 WP_196769368.1 500651..502876(+) (recJ) [Streptococcus oralis strain S.MIT/ORALIS-351]
MITPTYEWQFAPQVEDADFTKIAKKAGLGPEVARLLFERGIQDEESLKKFLEPSLEDLHDPYLLHDMDKAVKRIRQAIEE
GENILIYGDYDADGMTSASIMKESLEQLGAECRVYLPNRFTDGYGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIELAQ
SMGVDVIVTDHHSMPETLPDAYAIVHPEHPDAAYPFKQLAGCGVAFKLACALLEEVQVELLDLVAIGTVADMVSLTDENR
ILVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLDDPNPAIDLLTGFDDEEAHEIALMIHQKN
EERKEIVQSIYEEAKIMVDPEKKVQVLAKEGWNPGVLGIVAGRLLEELGQTVIVLNIEDGRAKGSARSVEAVDIFEALDP
HRDLFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYIREKGADAVGKNKLNLDEELDLETLSLETVKNFERLAPFGMDNQKP
VFYIKDFHVESARTMGAGNVHLKLKISKGEASFEVVAFGQGRWATEFAQTKNLELAVTLSVNQWNGQTALQLMMVDARVE
GVQLFNIRGKNAVLPEGVPVLDFAGELPELATSDAVVVKTIPEDITLLKAIFQEQDFSAVYFKNDIDKAYYLTGYGTREQ
FAKLYKTIYQFPEFDIRYKLKDLATYLNIQQILLIKMIQVFEELGFVTIKDGVMTVNKEAPKREIGESQIYQNLKQTVKD
QEMMALGTVQEMYDFLMEKSE

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=180928 BWR56_RS02365 WP_196769368.1 500651..502876(+) (recJ) [Streptococcus oralis strain S.MIT/ORALIS-351]
TTGATAACTCCTACTTATGAATGGCAGTTTGCCCCGCAGGTTGAAGATGCGGATTTTACAAAGATAGCCAAGAAGGCTGG
ACTGGGTCCTGAGGTGGCTCGGTTATTATTTGAAAGAGGGATTCAGGATGAGGAAAGTCTCAAGAAGTTTTTAGAACCTT
CTTTGGAGGACTTACATGACCCCTATCTGCTCCATGATATGGATAAGGCTGTGAAACGGATTCGTCAGGCCATTGAAGAA
GGGGAAAACATTCTCATCTATGGAGACTACGATGCGGACGGCATGACTTCAGCTTCGATTATGAAGGAAAGTTTGGAACA
GCTTGGCGCCGAGTGCCGTGTTTACCTGCCTAATCGTTTTACCGATGGCTATGGCCCCAATGCTAGTGTTTACAAATACT
TTATCGAGCAAGAAGGGATTTCCTTGATTGTGACAGTGGACAATGGAGTTGCAGGGCACGAAGCCATTGAATTGGCCCAG
TCTATGGGTGTGGATGTCATTGTGACCGACCACCATTCCATGCCGGAAACTCTTCCTGATGCCTATGCGATTGTTCACCC
TGAGCATCCAGATGCGGCCTATCCCTTCAAACAGTTAGCTGGTTGTGGAGTGGCTTTCAAGCTAGCTTGCGCTCTTTTAG
AAGAAGTGCAAGTTGAGTTACTAGATTTGGTAGCTATCGGTACCGTTGCAGATATGGTGAGTTTGACAGATGAAAACCGT
ATTTTGGTTCAATATGGTCTGGAAATGTTGGGACATACTCAGCGCATCGGTCTGCAAGAAATGCTGGACATGGCTGGGAT
TGCTGCGAATGAAGTGACGGAAGAAACGGTTGGCTTTCAGATTGCCCCTCGTTTAAATGCCTTGGGGCGATTGGATGATC
CCAATCCTGCCATTGATTTGCTGACTGGATTTGATGATGAGGAAGCGCATGAGATTGCCCTCATGATTCATCAGAAAAAT
GAAGAGCGCAAGGAAATCGTTCAGTCAATCTATGAAGAAGCTAAGATTATGGTGGATCCTGAGAAGAAGGTCCAGGTCTT
AGCCAAGGAAGGTTGGAATCCTGGAGTTCTAGGTATCGTGGCTGGCCGTTTGTTGGAAGAGCTAGGGCAAACAGTCATCG
TTCTCAATATAGAAGACGGTCGTGCCAAGGGTAGTGCTCGTAGTGTGGAAGCAGTCGATATTTTTGAAGCTCTGGATCCC
CATCGAGACCTCTTTATCGCCTTTGGCGGCCATGCTGGTGCAGCAGGGATGACACTGGAAGTTGAGAAACTTTCAGATTT
ATCTCAGGTTTTGGAAGACTATATCCGTGAAAAAGGTGCAGATGCTGTTGGCAAGAACAAGTTAAATCTAGATGAAGAGT
TGGACTTGGAGACCCTTAGTTTAGAAACGGTCAAGAACTTTGAACGTTTGGCACCTTTTGGAATGGACAATCAGAAACCT
GTCTTTTATATCAAGGATTTTCATGTCGAAAGTGCTCGTACCATGGGAGCAGGAAATGTCCACCTAAAACTAAAAATTTC
CAAGGGTGAGGCGAGTTTTGAAGTGGTGGCCTTTGGACAAGGTAGATGGGCAACAGAGTTTGCTCAAACCAAGAATCTAG
AATTGGCAGTCACCTTGTCTGTCAACCAATGGAATGGGCAAACTGCCCTCCAGTTGATGATGGTGGATGCGCGTGTGGAG
GGTGTTCAACTCTTTAACATTCGTGGGAAGAATGCAGTCTTGCCAGAAGGGGTTCCAGTCTTGGACTTTGCTGGAGAATT
ACCAGAATTAGCGACCAGTGATGCTGTGGTTGTGAAAACCATTCCTGAAGATATTACCTTGCTGAAGGCCATTTTTCAGG
AACAGGATTTCTCTGCTGTCTATTTCAAAAATGACATCGATAAGGCCTACTATCTGACAGGTTACGGGACTAGAGAACAG
TTTGCAAAATTGTACAAGACCATTTACCAGTTCCCAGAGTTTGATATTCGCTACAAGCTCAAAGATTTGGCGACTTATCT
CAATATCCAACAAATCTTGCTGATCAAGATGATCCAAGTATTTGAAGAGCTGGGATTTGTGACGATCAAAGATGGTGTCA
TGACAGTCAATAAAGAAGCGCCAAAGAGGGAGATTGGAGAAAGTCAGATATACCAGAATCTCAAACAGACCGTTAAAGAC
CAAGAAATGATGGCGCTGGGTACCGTGCAAGAAATGTATGATTTTTTAATGGAAAAAAGTGAATAG

Domains

Predicted by InterProScan.

RecJ OB domain (RecJ_OB)

(451-556)

DHHA1 domain (DHHA1)

(317-435)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(593-735)

DHH family (DHH)

(83-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

95.399

99.73

0.951
  recJ Bacillus subtilis subsp. subtilis str. 168

36.957

100

0.39

Multiple sequence alignment