Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BZY78_RS16230 Genome accession   NZ_CP019560
Coordinates   3142278..3142946 (-) Length   222 a.a.
NCBI ID   WP_057696464.1    Uniprot ID   -
Organism   Escherichia coli strain KSC1031     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3137278..3147946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZY78_RS16200 (BZY78_16445) rfaQ 3137456..3138514 (-) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -
  BZY78_RS16205 (BZY78_16450) waaA 3138927..3140204 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  BZY78_RS16210 (BZY78_16455) coaD 3140212..3140691 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  BZY78_RS16215 (BZY78_16460) mutM 3140730..3141539 (-) 810 WP_001114546.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  BZY78_RS16220 (BZY78_16465) rpmG 3141637..3141804 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  BZY78_RS16225 (BZY78_16470) rpmB 3141825..3142061 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  BZY78_RS16230 (BZY78_16475) radC 3142278..3142946 (-) 669 WP_057696464.1 DNA repair protein RadC Machinery gene
  BZY78_RS16235 (BZY78_16480) coaBC 3143118..3144338 (+) 1221 WP_000050117.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  BZY78_RS16240 (BZY78_16485) dut 3144316..3144774 (+) 459 WP_000976070.1 dUTP diphosphatase -
  BZY78_RS16245 (BZY78_16490) slmA 3144881..3145477 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  BZY78_RS16250 (BZY78_16495) pyrE 3145514..3146155 (-) 642 WP_000806161.1 orotate phosphoribosyltransferase -
  BZY78_RS16255 (BZY78_16500) rph 3146221..3146937 (-) 717 WP_001247093.1 ribonuclease PH -
  BZY78_RS16265 (BZY78_16510) yicC 3147064..3147927 (+) 864 WP_000621336.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25288.42 Da        Isoelectric Point: 8.4933

>NTDB_id=180859 BZY78_RS16230 WP_057696464.1 3142278..3142946(-) (radC) [Escherichia coli strain KSC1031]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHKHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=180859 BZY78_RS16230 WP_057696464.1 3142278..3142946(-) (radC) [Escherichia coli strain KSC1031]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAAACACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.099

100

0.491