Detailed information NTG0180841

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BZY78_RS11065
• Genome accession: NZ_CP019560
• Coordinates: 2135839..2136831 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain KSC1031
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2130839..2141831

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BZY78_RS11040 (BZY78_11215)	ygbN	2131493..2132857 (+)	1365	WP_000104429.1	GntP family transporter	-
BZY78_RS11045 (BZY78_11220)	-	2132897..2133133 (-)	237	WP_000562991.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
BZY78_RS11050 (BZY78_11225)	-	2133144..2134571 (-)	1428	WP_000863194.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
BZY78_RS11055 (BZY78_11230)	-	2134571..2135164 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
BZY78_RS11060 (BZY78_11235)	-	2135311..2135718 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
BZY78_RS11065 (BZY78_11240)	rpoS	2135839..2136831 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
BZY78_RS11070 (BZY78_11245)	nlpD	2136894..2137988 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
BZY78_RS11075 (BZY78_11250)	pcm	2138173..2138799 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
BZY78_RS11080 (BZY78_11255)	surE	2138793..2139554 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
BZY78_RS11085 (BZY78_11260)	truD	2139535..2140584 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
BZY78_RS11090 (BZY78_11265)	ispF	2140581..2141060 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BZY78_RS11095 (BZY78_11270)	ispD	2141060..2141770 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=180841 BZY78_RS11065 WP_000081550.1 2135839..2136831(-) (rpoS) [Escherichia coli strain KSC1031]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=180841 BZY78_RS11065 WP_000081550.1 2135839..2136831(-) (rpoS) [Escherichia coli strain KSC1031]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715