Detailed information NTG0180742

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BZY74_RS02295
• Genome accession: NZ_CP019558
• Coordinates: 425324..426316 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain KSC207
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 420324..431316

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BZY74_RS02270 (BZY74_02340)	ygbN	420978..422342 (+)	1365	WP_000104429.1	GntP family transporter	-
BZY74_RS02275 (BZY74_02345)	-	422382..422618 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
BZY74_RS02280 (BZY74_02350)	-	422629..424056 (-)	1428	WP_000863195.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
BZY74_RS02285 (BZY74_02355)	-	424056..424649 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
BZY74_RS02290 (BZY74_02360)	-	424796..425203 (+)	408	WP_001208070.1	MarR family winged helix-turn-helix transcriptional regulator	-
BZY74_RS02295 (BZY74_02365)	rpoS	425324..426316 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
BZY74_RS02300 (BZY74_02370)	nlpD	426379..427473 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
BZY74_RS02305 (BZY74_02375)	pcm	427658..428284 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
BZY74_RS02310 (BZY74_02380)	surE	428278..429039 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
BZY74_RS02315 (BZY74_02385)	truD	429020..430069 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
BZY74_RS02320 (BZY74_02390)	ispF	430066..430545 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BZY74_RS02325 (BZY74_02395)	ispD	430545..431255 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=180742 BZY74_RS02295 WP_000081550.1 425324..426316(-) (rpoS) [Escherichia coli strain KSC207]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=180742 BZY74_RS02295 WP_000081550.1 425324..426316(-) (rpoS) [Escherichia coli strain KSC207]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715