Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   A6M16_RS09715 Genome accession   NZ_CP015557
Coordinates   1983535..1984902 (-) Length   455 a.a.
NCBI ID   WP_024393368.1    Uniprot ID   A0A0Z8DEI8
Organism   Streptococcus suis strain DN13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1978535..1989902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6M16_RS09690 (A6M16_09695) - 1979285..1980565 (-) 1281 WP_063725383.1 MFS transporter -
  A6M16_RS09695 (A6M16_09700) - 1980657..1981322 (-) 666 WP_024395764.1 hypothetical protein -
  A6M16_RS09700 (A6M16_09705) - 1981327..1981773 (-) 447 WP_024395765.1 LytTR family DNA-binding domain-containing protein -
  A6M16_RS09705 (A6M16_09710) - 1981951..1982709 (-) 759 WP_013730631.1 TIGR00266 family protein -
  A6M16_RS09710 (A6M16_09715) - 1982917..1983411 (-) 495 WP_024395766.1 beta-class carbonic anhydrase -
  A6M16_RS09715 (A6M16_09720) radA 1983535..1984902 (-) 1368 WP_024393368.1 DNA repair protein RadA Machinery gene
  A6M16_RS09720 (A6M16_09725) - 1984909..1985442 (-) 534 WP_004298356.1 histidine phosphatase family protein -
  A6M16_RS09725 (A6M16_09730) - 1985449..1985892 (-) 444 WP_024395767.1 dUTP diphosphatase -
  A6M16_RS09730 (A6M16_09735) - 1985921..1986445 (-) 525 WP_024395768.1 hypothetical protein -
  A6M16_RS09735 (A6M16_09740) - 1986639..1986998 (-) 360 WP_024388516.1 YbaN family protein -
  A6M16_RS09740 (A6M16_09745) - 1987126..1987728 (+) 603 WP_063725384.1 NADPH-dependent FMN reductase -
  A6M16_RS09745 (A6M16_09750) - 1987743..1988978 (+) 1236 WP_063725385.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49859.33 Da        Isoelectric Point: 6.1911

>NTDB_id=180699 A6M16_RS09715 WP_024393368.1 1983535..1984902(-) (radA) [Streptococcus suis strain DN13]
MTIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=180699 A6M16_RS09715 WP_024393368.1 1983535..1984902(-) (radA) [Streptococcus suis strain DN13]
ATGACCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTCAAGAACGAGCGGGTCAGTCTGACAGGTG
AGAAGACTCGTCCTATGAAGCTCAATGAAGTGTCGTCCATTCAAGTGGCCCGCACCAAGACCAATATGGAAGAGTTTAAC
CGTGTCCTTGGTGGCGGCGTGGTGCCGGGCAGTCTGGTCCTGATTGGAGGCGATCCAGGGATTGGCAAATCGACCTTGCT
CCTGCAAGTATCGACCCAGCTTTCGACCATTGGCACCGTCCTCTACGTGTCGGGGGAGGAGTCTGCCCAGCAGATTAAGC
TCCGTGCCGAGCGTTTGGGCGACATTGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAAATCAAGCCAGATTTCCTGATTATCGACTCTATCCAGACCATTATGAGCCCTGACATTTCCAGCGTGCAAGG
CTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAACTCATGCAGATTGCCAAGACCAACAATATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGTACTCTGGCTGGACCTCGGACCTTGGAGCATATGGTAGACACCGTTCTTTATTTTGAGGGC
GAGCGGCAGCACACCTTCCGTATCTTGAGGGCGGTCAAAAATCGCTTTGGCTCCACCAACGAAATCGGTATTTTTGAAAT
GCAGTCGCAGGGTTTGGTCGAAGTCCTCAATCCTAGTGAGGTCTTTCTGGAAGAGCGTCTGGACGGGGCGACAGGCTCTG
CTATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCCGAAGTGCAGGCTCTGGTGACGCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGACTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGAGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTATCTTAAGTCAGCTGGCGGTGTCAAACTTGATGAGCCAGCTATTGACCTGGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGATAAGCCAACTAATCCACAAGAGTGCTTTATTGGCGAGATTGGCCTGACAGGGGAA
ATCCGCCGTGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACCAAGGTCTATGCCCCAAAAAA
TTCCCTGACAGGAATCAAGGTACCCAAGGAAATCACGGTTATCGGCGTGACCACCATTGGCGAAGTCTTGCAGAAAGTAT
TCAACTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8DEI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.372

99.341

0.908
  radA Streptococcus pneumoniae Rx1

91.15

99.341

0.905
  radA Streptococcus pneumoniae D39

91.15

99.341

0.905
  radA Streptococcus pneumoniae R6

91.15

99.341

0.905
  radA Streptococcus pneumoniae TIGR4

91.15

99.341

0.905
  radA Streptococcus mitis SK321

90.929

99.341

0.903
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.56

0.624

Multiple sequence alignment