Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   A6M16_RS03005 Genome accession   NZ_CP015557
Coordinates   582954..583757 (+) Length   267 a.a.
NCBI ID   WP_044681030.1    Uniprot ID   A0A0Z8P090
Organism   Streptococcus suis strain DN13     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 577954..588757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6M16_RS02980 (A6M16_02980) - 578383..579081 (-) 699 WP_024389911.1 amino acid ABC transporter permease -
  A6M16_RS02985 (A6M16_02985) - 579096..579935 (-) 840 WP_063725191.1 transporter substrate-binding domain-containing protein -
  A6M16_RS02990 (A6M16_02990) - 579946..580707 (-) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  A6M16_RS02995 (A6M16_02995) micA 580901..581605 (+) 705 WP_004298854.1 response regulator YycF Regulator
  A6M16_RS03000 (A6M16_03000) micB 581598..582947 (+) 1350 WP_002935841.1 cell wall metabolism sensor histidine kinase VicK Regulator
  A6M16_RS03005 (A6M16_03005) vicX 582954..583757 (+) 804 WP_044681030.1 MBL fold metallo-hydrolase Regulator
  A6M16_RS03010 vga(F) 584114..585499 (+) 1386 WP_063725192.1 ABC-F type ribosomal protection protein Vga(F) -
  A6M16_RS03015 (A6M16_03020) pbp2b 585591..587663 (+) 2073 WP_063725193.1 penicillin-binding protein PBP2B -
  A6M16_RS03020 (A6M16_03025) recR 587672..588268 (+) 597 WP_014637682.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29615.68 Da        Isoelectric Point: 5.7755

>NTDB_id=180678 A6M16_RS03005 WP_044681030.1 582954..583757(+) (vicX) [Streptococcus suis strain DN13]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVILTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATALTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=180678 A6M16_RS03005 WP_044681030.1 582954..583757(+) (vicX) [Streptococcus suis strain DN13]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACTTGGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGACCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGTGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGGATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGACATTGAGTCCTTTGGAGTTAGTCACGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATATTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCTCGGGTTCTTATTCATGGAATTTGAA
GCAACGGATTCTATCCGATAAGGGCCATCTTTGTAACGAAGATGGAGCTGATGCCATGATTCGCTCACTTGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGAGTTGGAGTAGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTGCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8P090

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772

Multiple sequence alignment