Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   A7E59_RS00275 Genome accession   NZ_CP015552
Coordinates   62285..63913 (-) Length   542 a.a.
NCBI ID   WP_046099772.1    Uniprot ID   A0AAJ0JPQ8
Organism   Staphylococcus carnosus strain TMW 2.1538     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 57285..68913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7E59_RS00250 (A7E59_00240) deoD 57751..58458 (+) 708 WP_046099767.1 purine-nucleoside phosphorylase -
  A7E59_RS00255 (A7E59_00245) - 58471..59826 (+) 1356 WP_046099768.1 tetracycline resistance MFS efflux pump -
  A7E59_RS00260 (A7E59_00250) deoC 59840..60502 (+) 663 WP_046099769.1 deoxyribose-phosphate aldolase -
  A7E59_RS00265 (A7E59_00255) deoB 60531..61709 (+) 1179 WP_046099770.1 phosphopentomutase -
  A7E59_RS00270 (A7E59_00260) - 61755..61883 (-) 129 Protein_50 NAD-dependent protein deacylase -
  A7E59_RS00275 (A7E59_00265) ccrB 62285..63913 (-) 1629 WP_046099772.1 recombinase family protein Machinery gene
  A7E59_RS00280 (A7E59_00270) ccrA 63934..65283 (-) 1350 WP_046099773.1 recombinase family protein Machinery gene
  A7E59_RS00285 (A7E59_00275) - 65669..66442 (+) 774 WP_046099774.1 acetoin reductase -
  A7E59_RS00290 (A7E59_00280) - 66645..67937 (+) 1293 WP_046099775.1 NtaA/DmoA family FMN-dependent monooxygenase -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62864.59 Da        Isoelectric Point: 9.5659

>NTDB_id=180587 A7E59_RS00275 WP_046099772.1 62285..63913(-) (ccrB) [Staphylococcus carnosus strain TMW 2.1538]
MQQLKQKRVSIYVRVSTEIQNTEGYSINGQINQIRDYCQFHHFEVTDIYADRGISGKSMNRPELQRMLKDANEGHIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAITYILSNPFYIGKIQFAK
YKDWNEKRRKGLNDNPVIAEGKHAPIISQELWDKVQSRKKQVSQKPQVHGKGTNLLTSLIFCEKCGATYAASTTTNTFKD
GTKKRIRYYSCSNFRNKGSKVCSENSVRADVIEKYVMDQILEIVKSDKVLKQVVERVNQENQVDVAALNHDIAYKQQQFD
EINTKLKNLIQTIEDNPDLTSALKPTIHQYETQLNNITNQMNQLKQQQNQEKLSYDTKQIAALLQRIFQNIESMDKSQLK
ALYLTVIDRIDIRKDENHKKQFYVTLKLNNEIIKQLFNNTNLDEVLLNTSSLFLPQTLYFQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=180587 A7E59_RS00275 WP_046099772.1 62285..63913(-) (ccrB) [Staphylococcus carnosus strain TMW 2.1538]
ATGCAACAACTCAAACAAAAACGTGTCAGTATCTATGTCCGTGTATCGACTGAAATCCAAAATACAGAAGGTTATAGTAT
TAATGGCCAAATCAATCAGATTAGAGACTACTGTCAATTTCACCATTTTGAAGTCACAGATATTTACGCTGATCGTGGTA
TCTCAGGAAAATCTATGAACCGTCCTGAGCTCCAACGTATGTTGAAGGATGCGAATGAAGGTCATATCGATTGTGTCATG
GTGTACAAAACAAACCGACTGGCACGTAATACATCAGACTTACTCAAAATTGTCGAAGATTTGCATAAGCAAAATGTCGA
ATTTTTCAGTTTGTCTGAACGTATGGAAGTCAATACTTCTTCTGGTAAACTCATGTTACAAATACTTGCGAGTTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAACGTATTCATGGGCCAAACCAGACGTGCCCAAGAAGGCTATTATCAAGGAAAT
TTACCGCTAGGCTATGACAAAATACCCGACAGTAAACACGAATTGATGATTAATCAACATGAAGCTAATATTGTAAAATA
TATTTTCGAATCTTATGCCAAAGGTCATGGTTATCGTAAAATAGCCAATGCACTCAATCATAAAGGTTATGTAACTAAAA
AAGGCAACCCTTTTAGTATTTCAGCTATTACTTATATTCTCTCAAATCCATTTTATATCGGCAAAATTCAATTCGCAAAA
TACAAAGATTGGAATGAAAAGCGTCGTAAGGGATTGAATGATAATCCAGTAATTGCTGAAGGTAAACACGCTCCTATTAT
TAGTCAAGAGCTATGGGATAAAGTACAATCACGTAAAAAACAAGTAAGCCAAAAACCCCAAGTACATGGTAAAGGAACAA
ACCTTTTGACGAGCCTAATTTTTTGTGAGAAATGCGGCGCCACATATGCTGCTTCCACTACTACTAATACATTTAAAGAT
GGCACCAAAAAACGCATTCGCTATTATTCATGTAGTAATTTTCGCAATAAAGGGTCAAAAGTGTGTTCCGAGAACAGCGT
ACGAGCTGATGTAATAGAAAAATATGTTATGGACCAAATACTTGAAATTGTCAAAAGTGATAAAGTTCTCAAACAAGTTG
TCGAACGTGTCAATCAAGAGAATCAAGTCGATGTAGCTGCACTTAACCATGATATTGCTTATAAACAACAACAATTTGAT
GAAATTAACACTAAACTTAAAAATTTAATTCAAACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCAT
TCATCAATATGAAACACAACTGAATAATATCACAAACCAAATGAATCAACTCAAGCAGCAACAAAATCAAGAGAAACTAT
CTTATGATACGAAACAAATCGCTGCGCTATTACAACGAATATTTCAAAATATAGAATCCATGGATAAATCACAGCTCAAA
GCTTTGTACCTAACGGTTATTGACCGTATTGACATTCGTAAAGATGAGAATCATAAAAAGCAATTCTATGTCACTCTCAA
GCTCAATAATGAAATTATTAAACAACTTTTCAATAATACTAATCTAGACGAAGTGCTCCTCAACACTTCGTCTTTGTTTT
TGCCTCAAACGCTCTACTTTCAAATCTAA

Domains

Predicted by InterProScan.

Resolvase, N terminal domain (Resolvase)

(11-156)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(295-360)

Recombinase (Recombinase)

(180-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

84.686

100

0.847

Multiple sequence alignment