Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BXO92_RS12695 Genome accession   NZ_CP019455
Coordinates   2525872..2526345 (+) Length   157 a.a.
NCBI ID   WP_001552321.1    Uniprot ID   -
Organism   Escherichia coli strain FHI_NMBU_03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2520872..2531345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BXO92_RS12670 (BXO92_12865) - 2521286..2522071 (+) 786 WP_024245822.1 hypothetical protein -
  BXO92_RS12675 (BXO92_12870) - 2522291..2522509 (-) 219 WP_001064742.1 AlpA family phage regulatory protein -
  BXO92_RS12680 (BXO92_12875) - 2522627..2523241 (-) 615 WP_000772910.1 inovirus Gp2 family protein -
  BXO92_RS12685 (BXO92_12880) - 2523834..2524787 (+) 954 WP_024223205.1 hypothetical protein -
  BXO92_RS12690 (BXO92_12885) - 2525024..2525842 (+) 819 WP_024223204.1 DUF932 domain-containing protein -
  BXO92_RS12695 (BXO92_12890) radC 2525872..2526345 (+) 474 WP_001552321.1 DNA repair protein RadC Machinery gene
  BXO92_RS12700 (BXO92_12895) - 2526345..2526680 (+) 336 WP_029696721.1 type IV toxin-antitoxin system YeeU family antitoxin -
  BXO92_RS12705 (BXO92_12900) - 2526711..2527052 (+) 342 WP_001683515.1 TA system toxin CbtA family protein -
  BXO92_RS12710 (BXO92_12905) - 2527167..2528000 (+) 834 WP_024223202.1 DUF4942 domain-containing protein -
  BXO92_RS12715 (BXO92_12910) - 2528077..2528325 (+) 249 WP_024187601.1 ribbon-helix-helix domain-containing protein -
  BXO92_RS12720 (BXO92_12915) - 2528329..2528604 (+) 276 WP_001683517.1 type II toxin-antitoxin system RelE/ParE family toxin -
  BXO92_RS12725 (BXO92_12920) - 2528718..2529515 (+) 798 WP_024223201.1 helix-turn-helix transcriptional regulator -
  BXO92_RS12730 (BXO92_12925) - 2529845..2531110 (+) 1266 WP_054486255.1 integrase arm-type DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17952.72 Da        Isoelectric Point: 8.6704

>NTDB_id=180569 BXO92_RS12695 WP_001552321.1 2525872..2526345(+) (radC) [Escherichia coli strain FHI_NMBU_03]
MSELMLTPVFSVSEQRVIRRAMRLLEKYQRNPGESFLSSDATKTWLQLHLARQEREMFVVLYLDNQNRLLEHETLFLGTI
NSTEVHPREIVKSALRHNAAAVILAHNHPSGVTEPSRADRLITTNIVKTLDLVKVRVLDHFIIGAGDVLSFAERGWL

Nucleotide


Download         Length: 474 bp        

>NTDB_id=180569 BXO92_RS12695 WP_001552321.1 2525872..2526345(+) (radC) [Escherichia coli strain FHI_NMBU_03]
ATGTCTGAACTGATGCTAACACCGGTATTTTCGGTGAGTGAACAACGTGTTATCCGCCGTGCGATGCGTCTGCTGGAGAA
ATATCAACGCAATCCTGGCGAATCTTTTCTTTCCTCTGACGCCACAAAAACCTGGCTGCAACTGCATCTGGCACGACAGG
AGCGGGAAATGTTTGTTGTGCTCTACCTCGATAACCAGAACCGACTGCTGGAACACGAAACGCTATTTCTCGGCACGATT
AACAGCACAGAAGTACATCCCCGTGAGATTGTGAAATCTGCGCTACGGCACAACGCCGCAGCAGTGATCCTTGCGCATAA
CCATCCCTCCGGCGTGACGGAACCCAGTCGGGCCGACAGACTTATTACAACGAATATTGTTAAGACACTGGATTTGGTGA
AAGTGAGGGTGCTGGATCATTTCATTATTGGGGCGGGGGATGTCCTCTCTTTTGCCGAACGGGGCTGGCTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.932

75.159

0.42

Multiple sequence alignment