Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BXO92_RS08710 Genome accession   NZ_CP019455
Coordinates   1725989..1726657 (-) Length   222 a.a.
NCBI ID   WP_001296533.1    Uniprot ID   B7N279
Organism   Escherichia coli strain FHI_NMBU_03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1720989..1731657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BXO92_RS08680 (BXO92_08815) rfaQ 1721167..1722225 (-) 1059 WP_000360417.1 lipopolysaccharide core heptosyltransferase RfaQ -
  BXO92_RS08685 (BXO92_08820) waaA 1722638..1723915 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  BXO92_RS08690 (BXO92_08825) coaD 1723923..1724402 (+) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  BXO92_RS08695 (BXO92_08830) mutM 1724441..1725250 (-) 810 WP_001114505.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  BXO92_RS08700 (BXO92_08835) rpmG 1725348..1725515 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  BXO92_RS08705 (BXO92_08840) rpmB 1725536..1725772 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  BXO92_RS08710 (BXO92_08845) radC 1725989..1726657 (-) 669 WP_001296533.1 DNA repair protein RadC Machinery gene
  BXO92_RS08715 (BXO92_08850) coaBC 1726829..1728049 (+) 1221 WP_024223552.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  BXO92_RS08720 (BXO92_08855) dut 1728027..1728485 (+) 459 WP_000976070.1 dUTP diphosphatase -
  BXO92_RS08725 (BXO92_08860) slmA 1728592..1729188 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  BXO92_RS08730 (BXO92_08865) pyrE 1729225..1729866 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  BXO92_RS08735 (BXO92_08870) rph 1729932..1730648 (-) 717 WP_001247093.1 ribonuclease PH -
  BXO92_RS08745 (BXO92_08880) yicC 1730775..1731638 (+) 864 WP_000621331.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25286.40 Da        Isoelectric Point: 7.9748

>NTDB_id=180545 BXO92_RS08710 WP_001296533.1 1725989..1726657(-) (radC) [Escherichia coli strain FHI_NMBU_03]
MKNNVQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=180545 BXO92_RS08710 WP_001296533.1 1725989..1726657(-) (radC) [Escherichia coli strain FHI_NMBU_03]
GTGAAAAACAATGTACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAGCAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTACGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACAGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCGCATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(10-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7N279

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment