Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BXO92_RS03570 Genome accession   NZ_CP019455
Coordinates   710951..711466 (-) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain FHI_NMBU_03     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 705951..716466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BXO92_RS03545 (BXO92_03595) emrB 706576..708114 (+) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  BXO92_RS03550 (BXO92_03600) - 708372..709079 (+) 708 WP_024223849.1 RNA ligase family protein -
  BXO92_RS03555 (BXO92_03605) - 709076..710188 (+) 1113 WP_000638133.1 ATP-binding protein -
  BXO92_RS03560 (BXO92_03615) tnpA 710297..710755 (-) 459 WP_000526115.1 IS200/IS605-like element IS200C family transposase -
  BXO92_RS03570 (BXO92_03625) luxS 710951..711466 (-) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  BXO92_RS03575 (BXO92_03630) gshA 711616..713172 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  BXO92_RS03580 (BXO92_03635) yqaA 713245..713673 (-) 429 WP_001287462.1 YqaA family protein -
  BXO92_RS03585 (BXO92_03640) yqaB 713670..714236 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  BXO92_RS03615 (BXO92_03670) csrA 715425..715610 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=180522 BXO92_RS03570 WP_001130208.1 710951..711466(-) (luxS) [Escherichia coli strain FHI_NMBU_03]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=180522 BXO92_RS03570 WP_001130208.1 710951..711466(-) (luxS) [Escherichia coli strain FHI_NMBU_03]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTAGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737