Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BW707_RS19195 Genome accession   NZ_CP019392
Coordinates   4017087..4018514 (+) Length   475 a.a.
NCBI ID   WP_000980560.1    Uniprot ID   -
Organism   Escherichia coli strain XH992     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4012087..4023514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BW707_RS19155 (BW707_20950) yeeW 4012271..4012465 (+) 195 WP_000988600.1 DUF5983 family protein -
  BW707_RS19160 (BW707_20955) - 4012511..4012591 (+) 81 Protein_3786 hypothetical protein -
  BW707_RS19165 - 4012880..4013026 (-) 147 Protein_3787 transposase domain-containing protein -
  BW707_RS19170 - 4013080..4013262 (+) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  BW707_RS19175 (BW707_20965) tmaR 4013363..4013692 (-) 330 WP_000450409.1 DUF496 family protein -
  BW707_RS19180 (BW707_20970) yeeA 4013864..4014922 (-) 1059 WP_001200888.1 FUSC family protein -
  BW707_RS19185 (BW707_20975) sbmC 4015120..4015593 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  BW707_RS19190 (BW707_20980) dacD 4015712..4016878 (-) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  BW707_RS19195 (BW707_20985) sbcB 4017087..4018514 (+) 1428 WP_000980560.1 exodeoxyribonuclease I Machinery gene
  BW707_RS19200 (BW707_20990) tsuB 4018557..4018784 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  BW707_RS19205 (BW707_20995) tsuA 4018798..4019856 (-) 1059 WP_000492349.1 thiosulfate utilization transporter TsuA/YeeE -
  BW707_RS19210 (BW707_21000) plaP 4020035..4021393 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  BW707_RS19215 yoeI 4021383..4021445 (-) 63 WP_010723108.1 membrane protein YoeI -
  BW707_RS19220 (BW707_21005) yeeY 4021660..4022589 (-) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  BW707_RS19225 (BW707_21010) yeeZ 4022635..4023459 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54392.67 Da        Isoelectric Point: 5.3498

>NTDB_id=180496 BW707_RS19195 WP_000980560.1 4017087..4018514(+) (sbcB) [Escherichia coli strain XH992]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
ERLGIARQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDDNEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQLYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=180496 BW707_RS19195 WP_000980560.1 4017087..4018514(+) (sbcB) [Escherichia coli strain XH992]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCACCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGACGCT
GAGCGTTTAGGGATTGCTCGTCAACACTGCCTGGATAACCTGAAAGTGTTGCGCGAAAACCCGCAAGTACGCGACAAAGT
TGTGGCAATTTTTGCAGAAGCTGAACCGTTTACACCATCAGATAATGTAGATGCACAGCTTTATAATGGCTTTTTTAGCG
ACGCCGATCGTGCAGCAATGAAAATCGTGCTGGAGACTGAACCGCGTAATTTACCGGCTCTGGATATCACCTTTGTTGAT
AAGCGTATCGAGAAACTCCTGTTCAACTACCGCGCCCGCAACTTCCCCGGCACGTTAGATGACAACGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCTGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583