Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BW707_RS19135 Genome accession   NZ_CP019392
Coordinates   4010610..4011086 (+) Length   158 a.a.
NCBI ID   WP_012311619.1    Uniprot ID   -
Organism   Escherichia coli strain XH992     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4005610..4016086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BW707_RS19105 (BW707_20890) - 4005774..4006679 (+) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -
  BW707_RS19110 (BW707_20895) - 4006676..4007746 (+) 1071 WP_000102660.1 patatin-like phospholipase family protein -
  BW707_RS19115 (BW707_20900) - 4007882..4008565 (+) 684 WP_000775500.1 hypothetical protein -
  BW707_RS19120 (BW707_20905) - 4008581..4008991 (+) 411 WP_000846713.1 hypothetical protein -
  BW707_RS19125 (BW707_20915) - 4009212..4010033 (+) 822 WP_001234504.1 DUF932 domain-containing protein -
  BW707_RS19130 (BW707_20920) - 4010115..4010594 (+) 480 WP_000860090.1 antirestriction protein -
  BW707_RS19135 (BW707_20925) radC 4010610..4011086 (+) 477 WP_012311619.1 RadC family protein Machinery gene
  BW707_RS19140 (BW707_20930) yeeT 4011149..4011370 (+) 222 WP_000692359.1 DUF987 domain-containing protein -
  BW707_RS19145 (BW707_20935) cbeA 4011444..4011812 (+) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  BW707_RS19150 cbtA 4011901..4012274 (+) 374 Protein_3784 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  BW707_RS19155 (BW707_20950) yeeW 4012271..4012465 (+) 195 WP_000988600.1 DUF5983 family protein -
  BW707_RS19160 (BW707_20955) - 4012511..4012591 (+) 81 Protein_3786 hypothetical protein -
  BW707_RS19165 - 4012880..4013026 (-) 147 Protein_3787 transposase domain-containing protein -
  BW707_RS19170 - 4013080..4013262 (+) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  BW707_RS19175 (BW707_20965) tmaR 4013363..4013692 (-) 330 WP_000450409.1 DUF496 family protein -
  BW707_RS19180 (BW707_20970) yeeA 4013864..4014922 (-) 1059 WP_001200888.1 FUSC family protein -
  BW707_RS19185 (BW707_20975) sbmC 4015120..4015593 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17646.31 Da        Isoelectric Point: 6.9180

>NTDB_id=180495 BW707_RS19135 WP_012311619.1 4010610..4011086(+) (radC) [Escherichia coli strain XH992]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVPFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADCLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=180495 BW707_RS19135 WP_012311619.1 4010610..4011086(+) (radC) [Escherichia coli strain XH992]
ATGCAACAACTTTCCTTTCTGCCAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGCCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACTGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392