Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BW158_RS10630 Genome accession   NZ_CP019361
Coordinates   1826069..1827496 (-) Length   475 a.a.
NCBI ID   WP_001471732.1    Uniprot ID   -
Organism   Escherichia coli strain XH993     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1821069..1832496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BW158_RS10595 (BW158_11775) hisL 1821653..1821703 (-) 51 WP_001364200.1 his operon leader peptide -
  BW158_RS10600 (BW158_11780) yefM 1821986..1822237 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  BW158_RS10605 (BW158_11785) yoeB 1822234..1822488 (+) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  BW158_RS10610 (BW158_11790) yeeZ 1822571..1823395 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  BW158_RS10615 (BW158_11795) yeeY 1823441..1824370 (+) 930 WP_000803374.1 LysR substrate-binding domain-containing protein -
  BW158_RS10620 yoeI 1824585..1824647 (+) 63 WP_010723108.1 membrane protein YoeI -
  BW158_RS10625 (BW158_11800) plaP 1824637..1825995 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  BW158_RS10630 (BW158_11805) sbcB 1826069..1827496 (-) 1428 WP_001471732.1 exodeoxyribonuclease I Machinery gene
  BW158_RS10635 (BW158_11810) dacD 1827705..1828871 (+) 1167 WP_024201915.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  BW158_RS10640 (BW158_11815) sbmC 1828990..1829463 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  BW158_RS10645 (BW158_11820) yeeA 1829661..1830719 (+) 1059 WP_001200890.1 FUSC family protein -
  BW158_RS10650 (BW158_11825) tmaR 1830891..1831220 (+) 330 WP_000450409.1 DUF496 family protein -
  BW158_RS10655 - 1831321..1831506 (-) 186 Protein_1737 EutP/PduV family microcompartment system protein -
  BW158_RS10660 - 1831566..1831703 (+) 138 Protein_1738 transposase domain-containing protein -
  BW158_RS10665 (BW158_11835) - 1831992..1832084 (-) 93 Protein_1739 DUF957 domain-containing protein -
  BW158_RS10670 (BW158_11840) yeeW 1832118..1832312 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54497.81 Da        Isoelectric Point: 5.4700

>NTDB_id=180378 BW158_RS10630 WP_001471732.1 1826069..1827496(-) (sbcB) [Escherichia coli strain XH993]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQVYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=180378 BW158_RS10630 WP_001471732.1 1826069..1827496(-) (sbcB) [Escherichia coli strain XH993]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGTCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment