Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   A6K30_RS05480 Genome accession   NZ_CP015528
Coordinates   1086525..1086971 (-) Length   148 a.a.
NCBI ID   WP_032685882.1    Uniprot ID   -
Organism   Campylobacter coli strain YH501     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1081525..1091971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6K30_RS05465 (A6K30_05465) flgH 1082775..1083473 (+) 699 WP_002787400.1 flagellar basal body L-ring protein FlgH -
  A6K30_RS05470 (A6K30_05470) ispG 1083557..1084630 (-) 1074 WP_002776443.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  A6K30_RS05475 (A6K30_05475) - 1084690..1086528 (-) 1839 WP_002787399.1 primosomal protein N' -
  A6K30_RS05480 (A6K30_05480) Cj0683 1086525..1086971 (-) 447 WP_032685882.1 type II secretion system protein Machinery gene
  A6K30_RS05485 (A6K30_05485) - 1086968..1087213 (-) 246 WP_002776428.1 hypothetical protein -
  A6K30_RS05490 (A6K30_05490) - 1087203..1087433 (-) 231 WP_002776426.1 hypothetical protein -
  A6K30_RS05495 (A6K30_05495) uvrB 1087587..1089560 (+) 1974 WP_053875446.1 excinuclease ABC subunit UvrB -
  A6K30_RS05500 (A6K30_05500) - 1089595..1091019 (-) 1425 WP_002776421.1 anaerobic C4-dicarboxylate transporter -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17303.13 Da        Isoelectric Point: 7.6247

>NTDB_id=180372 A6K30_RS05480 WP_032685882.1 1086525..1086971(-) (Cj0683) [Campylobacter coli strain YH501]
MKKAFTLLELVFVILILGILASLSFSFANQNKNDAKLLKLKIDYEMLNSALSLMRTQVELKQISSFSPNLDEAKINTQEE
KLFYCQTSQNCTYSLLHTPIYSSFNAWMKTAPNRYRFFLNTKEWVDFFYNADFAILECLSEKYCKELL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=180372 A6K30_RS05480 WP_032685882.1 1086525..1086971(-) (Cj0683) [Campylobacter coli strain YH501]
ATGAAAAAGGCTTTTACTCTCTTAGAGCTTGTTTTTGTGATATTGATTTTAGGGATATTGGCAAGTTTAAGCTTCTCTTT
TGCCAATCAAAATAAAAACGATGCGAAATTATTAAAATTGAAAATAGATTATGAAATGCTAAATTCAGCCCTATCCCTTA
TGCGTACTCAAGTTGAACTCAAACAAATCAGTTCTTTTTCTCCTAATCTTGATGAAGCAAAAATCAACACTCAAGAAGAA
AAACTTTTTTACTGCCAAACTAGTCAAAATTGCACCTATTCTTTGCTTCATACACCTATTTATTCTAGTTTTAATGCTTG
GATGAAAACAGCACCCAATCGATATAGATTTTTTTTAAATACAAAAGAATGGGTTGATTTTTTTTATAATGCTGATTTTG
CTATTTTAGAATGTTTGAGTGAAAAATATTGTAAAGAATTATTATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.432

100

0.574

Multiple sequence alignment