Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BW158_RS07315 Genome accession   NZ_CP019361
Coordinates   1122036..1122551 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain XH993     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1117036..1127551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BW158_RS07275 (BW158_08150) csrA 1117762..1117947 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  BW158_RS07300 (BW158_08175) yqaB 1119266..1119832 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  BW158_RS07305 (BW158_08180) yqaA 1119829..1120257 (+) 429 WP_001287454.1 YqaA family protein -
  BW158_RS07310 (BW158_08185) gshA 1120330..1121886 (+) 1557 WP_113403865.1 glutamate--cysteine ligase -
  BW158_RS07315 (BW158_08190) luxS 1122036..1122551 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  BW158_RS07320 (BW158_08195) emrB 1122615..1124153 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  BW158_RS07325 (BW158_08200) emrA 1124170..1125342 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  BW158_RS07330 (BW158_08205) emrR 1125469..1125999 (-) 531 WP_000378434.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  BW158_RS07335 (BW158_08210) ygaH 1126090..1126425 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  BW158_RS07340 (BW158_08215) ygaZ 1126415..1127152 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=180369 BW158_RS07315 WP_001130211.1 1122036..1122551(+) (luxS) [Escherichia coli strain XH993]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=180369 BW158_RS07315 WP_001130211.1 1122036..1122551(+) (luxS) [Escherichia coli strain XH993]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731