Detailed information NTG0180368

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: A6K30_RS03190
• Genome accession: NZ_CP015528
• Coordinates: 631934..632878 (-)
• Length: 314 a.a.
• NCBI ID: WP_021033688.1
• Uniprot ID: -
• Organism: Campylobacter coli strain YH501
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 626934..637878

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A6K30_RS03155 (A6K30_03155)	-	627125..627325 (+)	201	WP_002777240.1	cbb3-type cytochrome oxidase assembly protein	-
A6K30_RS03160 (A6K30_03160)	-	627355..627654 (-)	300	WP_002777238.1	c-type cytochrome	-
A6K30_RS03165 (A6K30_03165)	-	627731..628294 (+)	564	WP_002777235.1	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
A6K30_RS03170 (A6K30_03170)	rfaD	628291..629244 (+)	954	WP_002796912.1	ADP-glyceromanno-heptose 6-epimerase	-
A6K30_RS03175 (A6K30_03175)	rfaE1	629237..630622 (+)	1386	WP_002844795.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
A6K30_RS03180 (A6K30_03180)	gmhA	630619..631179 (+)	561	WP_002806601.1	D-sedoheptulose 7-phosphate isomerase	-
A6K30_RS03185 (A6K30_03185)	-	631179..631941 (+)	763	Protein_611	glycosyltransferase family 25 protein	-
A6K30_RS03190 (A6K30_03190)	waaF	631934..632878 (-)	945	WP_021033688.1	lipopolysaccharide heptosyltransferase II	Regulator
A6K30_RS03195 (A6K30_03195)	-	632938..633759 (+)	822	WP_002844798.1	glycosyltransferase family 2 protein	-
A6K30_RS03200 (A6K30_03200)	-	633802..635169 (+)	1368	WP_002844799.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
A6K30_RS03205 (A6K30_03205)	gmd	635170..636309 (+)	1140	WP_002844800.1	GDP-mannose 4,6-dehydratase	-
A6K30_RS03210 (A6K30_03210)	-	636302..637240 (+)	939	WP_002844801.1	NAD-dependent epimerase/dehydratase family protein	-

Sequence

Protein

• Length: 314 a.a.
• Molecular weight: 36126.75 Da
• Isoelectric Point: 10.3770

>NTDB_id=180368 A6K30_RS03190 WP_021033688.1 631934..632878(-) (waaF) [Campylobacter coli strain YH501]
MKIFIHLPTWLGDAVMASPALYGVYHHFKNAEFILYGSFVSTALFKEFPNAKIIVENKKSRYKQTLSLRKKLGKIDLALS
FRSALSSKIILHILKAKKRYFFNKYNFKEEHQVLKYLYFIENSLDIKAHSKDLKLPFRLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAQVALNFSKTHEILIFGAGKAEQELCDEIFHILKEKNVKVKNLCNKTTIKMLCQNIIFCDIFITNDS
GPMHIAAAYKTKTIAIFGPTKFTQTSPWQNQNTKLVHLNLACMPCMQKTCPLKHHQCMKDLKPEKILEAIRNFT

Nucleotide

• Length: 945 bp

>NTDB_id=180368 A6K30_RS03190 WP_021033688.1 631934..632878(-) (waaF) [Campylobacter coli strain YH501]
ATGAAAATTTTTATCCATCTTCCCACTTGGCTAGGCGATGCAGTCATGGCCTCACCTGCTTTATATGGAGTTTATCATCA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACAGCGCTTTTTAAGGAATTTCCTAATGCTAAAATCA
TTGTAGAAAATAAAAAATCACGCTACAAACAAACCCTTTCTTTACGCAAAAAACTTGGAAAAATCGATCTAGCCCTTTCT
TTTAGATCAGCTCTTTCCTCTAAGATCATTTTGCATATCCTTAAGGCAAAAAAAAGATATTTTTTTAACAAGTATAATTT
CAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCACTAGATATCAAAGCTCATTCTAAGGATTTAA
AACTCCCTTTTAGATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCCTAGGCTTAAATCCTGGAGCA
AGTTTTGGAAGTGCTAAAAGATGGGATGCGAGTTATTTTGCACAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCGGGCAAGGCAGAACAAGAACTTTGCGATGAAATTTTTCATATATTAAAAGAAAAAAATGTCAAGGTAA
AAAATCTTTGCAATAAAACCACCATCAAAATGCTTTGTCAAAATATCATTTTTTGTGATATCTTCATCACAAATGATAGT
GGCCCTATGCACATAGCTGCCGCTTATAAAACAAAAACCATAGCTATCTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATACAAAATTAGTACATCTAAATTTAGCTTGTATGCCTTGCATGCAAAAAACCTGCCCTTTAAAAC
ATCATCAGTGTATGAAAGATTTAAAACCGGAAAAAATTTTAGAAGCAATCCGAAATTTTACTTAA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (108-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	82.428	99.682	0.822