Detailed information NTG0180366

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BW158_RS07035
• Genome accession: NZ_CP019361
• Coordinates: 1068283..1069275 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain XH993
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1063283..1074275

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BW158_RS07005 (BW158_07870)	ispD	1063344..1064054 (+)	711	WP_000246144.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BW158_RS07010 (BW158_07875)	ispF	1064054..1064533 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BW158_RS07015 (BW158_07880)	truD	1064530..1065579 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
BW158_RS07020 (BW158_07885)	surE	1065560..1066321 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
BW158_RS07025 (BW158_07890)	pcm	1066315..1066941 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
BW158_RS07030 (BW158_07895)	nlpD	1067126..1068220 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
BW158_RS07035 (BW158_07900)	rpoS	1068283..1069275 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
BW158_RS07040 (BW158_07905)	ygbN	1069369..1070733 (-)	1365	WP_000104459.1	GntP family transporter	-
BW158_RS07045 (BW158_07910)	ygbM	1070822..1071598 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
BW158_RS07050 (BW158_07915)	ygbL	1071603..1072241 (-)	639	WP_001278994.1	aldolase	-
BW158_RS07055 (BW158_07920)	otnK	1072238..1073500 (-)	1263	WP_000590386.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=180366 BW158_RS07035 WP_000081550.1 1068283..1069275(+) (rpoS) [Escherichia coli strain XH993]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=180366 BW158_RS07035 WP_000081550.1 1068283..1069275(+) (rpoS) [Escherichia coli strain XH993]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTTTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715