Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BW158_RS02310 Genome accession   NZ_CP019361
Coordinates   94090..94758 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain XH993     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 89090..99758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BW158_RS02280 (BW158_02625) yicC 89109..89972 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  BW158_RS02285 (BW158_02635) rph 90099..90815 (+) 717 WP_001247089.1 ribonuclease PH -
  BW158_RS02290 (BW158_02640) pyrE 90881..91522 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  BW158_RS02295 (BW158_02645) slmA 91559..92155 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  BW158_RS02300 (BW158_02650) dut 92262..92720 (-) 459 WP_000976070.1 dUTP diphosphatase -
  BW158_RS02305 (BW158_02655) coaBC 92698..93918 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  BW158_RS02310 (BW158_02660) radC 94090..94758 (+) 669 WP_001297375.1 RadC family protein Machinery gene
  BW158_RS02315 (BW158_02665) rpmB 94975..95211 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  BW158_RS02320 (BW158_02670) rpmG 95232..95399 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  BW158_RS02325 (BW158_02675) mutM 95497..96306 (+) 810 WP_001114543.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  BW158_RS02330 (BW158_02680) coaD 96345..96824 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  BW158_RS02335 (BW158_02685) waaA 96832..98109 (-) 1278 WP_000891574.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  BW158_RS02340 (BW158_02690) rfaQ 98522..99580 (+) 1059 WP_000360401.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=180347 BW158_RS02310 WP_001297375.1 94090..94758(+) (radC) [Escherichia coli strain XH993]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=180347 BW158_RS02310 WP_001297375.1 94090..94758(+) (radC) [Escherichia coli strain XH993]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGTTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496