Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   A6P53_RS10875 Genome accession   NZ_CP015516
Coordinates   2424146..2425960 (-) Length   604 a.a.
NCBI ID   WP_034699929.1    Uniprot ID   -
Organism   Enterococcus hirae strain R17     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2419146..2430960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6P53_RS10855 (A6P53_10850) - 2419217..2420674 (+) 1458 WP_034699920.1 glycoside-pentoside-hexuronide (GPH):cation symporter -
  A6P53_RS10860 (A6P53_10855) - 2420690..2421724 (+) 1035 WP_063627535.1 aldose epimerase family protein -
  A6P53_RS10865 (A6P53_10860) - 2421727..2422914 (+) 1188 WP_010720860.1 galactokinase -
  A6P53_RS10870 (A6P53_10865) - 2423136..2423603 (-) 468 WP_063627536.1 DUF4809 family protein -
  A6P53_RS10875 (A6P53_10870) pepF 2424146..2425960 (-) 1815 WP_034699929.1 oligoendopeptidase F Regulator
  A6P53_RS10880 (A6P53_10875) - 2426084..2427079 (-) 996 WP_081248844.1 competence protein CoiA -
  A6P53_RS10885 (A6P53_10880) - 2427180..2427827 (-) 648 WP_010720865.1 adaptor protein MecA -
  A6P53_RS10890 (A6P53_10885) spxA 2428216..2428614 (-) 399 WP_002296384.1 transcriptional regulator SpxA -
  A6P53_RS10895 (A6P53_10890) - 2429393..2430100 (+) 708 WP_010720866.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69914.26 Da        Isoelectric Point: 4.7590

>NTDB_id=180277 A6P53_RS10875 WP_034699929.1 2424146..2425960(-) (pepF) [Enterococcus hirae strain R17]
MSETTQLPKREELPEELTWDLTKIFSSDQEFDEKYQELTEELKNSDQYKGTLAKGATEFLNALEFVLDVYRKVELIYVYA
HLKNDQDTANTTYQALYARAGSLFSKVSEAVSWYEPEVLQLSDEQIWQYFEQEPKLELYRHYVKQMVDNRAHILSAEQES
LLAGAGEIFGASSDTFAVLNNADLEFPTIVGEDGKKIQLSHGVYGQLMESTDRTVREAAFKGLYRVYDQFKNTFASTLST
HIKGHNYKAKIRHYHSAREASLSNNHIPESVYDTLIEVVNKNLPLLHRYMELRKRLLNVEKLHMYDLYTPVLGEAPIKFT
YEEAKQKALEALAPMGEEYLSVVEKAFADRWIDVVENKGKRSGAYSSGSYDTNPYILMNWHDTLDQLFTLVHEMGHSVHS
YFTRSNQPFVYGDYSIFLAEIASTTNENILTEYLLETEQDPRVRAYVLNHYLDGFKGTIFRQTQFAEFEHFMHEEDAKGV
PLTSEYLSDSYGELNAKYYGSAVEKDPEIKYEWSRIPHFYYNYYVYQYATGFSAASALAQKIWGQEPDALEKYLTYLKSG
NSDYPVEVMKKAGVDMTKADYIESAMTKFEQRLNELEELVEKLS

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=180277 A6P53_RS10875 WP_034699929.1 2424146..2425960(-) (pepF) [Enterococcus hirae strain R17]
ATGAGTGAAACGACCCAATTACCAAAACGAGAAGAATTGCCTGAAGAACTAACTTGGGATCTCACCAAAATCTTTTCTAG
CGATCAAGAATTTGATGAAAAATACCAAGAATTAACAGAAGAATTAAAAAATTCCGATCAATATAAAGGAACATTAGCAA
AGGGTGCGACAGAATTTCTGAATGCGCTTGAATTTGTTTTAGATGTTTACCGAAAAGTGGAACTCATTTATGTCTATGCT
CATTTAAAAAATGACCAAGATACAGCAAATACGACTTATCAAGCGTTATATGCGAGAGCAGGAAGTTTATTTTCTAAAGT
AAGTGAAGCAGTCTCTTGGTATGAACCAGAAGTCCTTCAACTTTCAGATGAGCAGATTTGGCAGTATTTTGAGCAAGAGC
CGAAGTTAGAACTATATCGTCATTACGTAAAACAAATGGTGGATAATCGTGCGCATATATTATCTGCAGAACAAGAATCA
TTACTAGCTGGAGCAGGAGAAATTTTTGGCGCTTCCAGTGATACATTTGCTGTTTTAAACAATGCCGATCTAGAGTTTCC
TACGATCGTGGGAGAAGATGGGAAAAAAATCCAGCTTTCTCATGGTGTCTATGGTCAATTGATGGAAAGCACAGATCGTA
CAGTTAGAGAAGCTGCATTCAAAGGGCTTTATCGTGTCTATGATCAATTTAAAAATACGTTTGCTTCAACATTGAGTACC
CATATCAAAGGGCACAATTACAAAGCAAAAATTCGCCATTATCATTCTGCTAGAGAAGCTTCTTTGAGCAACAATCATAT
CCCAGAAAGTGTTTATGATACATTGATTGAAGTAGTCAATAAAAATCTTCCGCTATTGCATCGCTATATGGAATTACGCA
AACGTCTTTTAAATGTAGAAAAACTGCATATGTATGATCTATATACACCAGTATTAGGAGAAGCTCCTATCAAGTTCACT
TACGAAGAAGCGAAACAGAAAGCTTTGGAAGCTTTGGCACCAATGGGGGAAGAATATCTGTCAGTGGTAGAAAAAGCTTT
TGCTGACCGTTGGATCGATGTGGTCGAAAATAAAGGGAAACGAAGTGGCGCTTATTCTTCAGGAAGCTATGATACCAATC
CTTATATTTTAATGAACTGGCATGATACGTTGGATCAATTATTTACGCTCGTACATGAAATGGGACATAGTGTGCATAGT
TACTTTACTCGTTCAAATCAACCGTTTGTTTACGGTGATTATTCCATTTTCTTAGCAGAGATTGCTTCAACAACTAATGA
AAATATTTTGACAGAATACTTGCTTGAAACTGAACAAGATCCACGTGTTCGTGCATATGTCTTGAATCATTATCTTGATG
GATTCAAAGGAACGATTTTCAGACAAACACAATTTGCAGAATTTGAGCATTTCATGCATGAAGAAGATGCCAAAGGTGTA
CCTTTGACCAGTGAATATCTAAGCGACAGTTATGGGGAATTGAATGCCAAATATTATGGATCAGCGGTAGAAAAAGATCC
GGAAATCAAATATGAATGGTCTCGTATCCCACATTTCTACTATAATTATTATGTTTATCAATATGCAACAGGCTTTTCAG
CTGCCTCTGCTTTGGCGCAGAAAATTTGGGGTCAAGAGCCAGATGCTCTAGAAAAATACCTTACGTATTTGAAATCAGGA
AATAGTGATTACCCAGTTGAAGTCATGAAAAAAGCAGGCGTCGACATGACAAAAGCTGATTATATCGAATCAGCTATGAC
TAAGTTTGAACAACGATTAAATGAATTAGAGGAACTAGTTGAAAAATTGTCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

56.566

98.344

0.556

Multiple sequence alignment