Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   BWZ24_RS23755 Genome accession   NZ_CP019355
Coordinates   4539063..4540082 (+) Length   339 a.a.
NCBI ID   WP_052971228.1    Uniprot ID   -
Organism   Escherichia coli strain XH988     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4534063..4545082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWZ24_RS23745 (BWZ24_25760) rpmE 4536294..4536506 (-) 213 WP_000710769.1 50S ribosomal protein L31 -
  BWZ24_RS23750 (BWZ24_25765) priA 4536709..4538907 (+) 2199 WP_096938547.1 primosomal protein N' Machinery gene
  BWZ24_RS23755 (BWZ24_25770) cytR 4539063..4540082 (+) 1020 WP_052971228.1 DNA-binding transcriptional regulator CytR Regulator
  BWZ24_RS23760 (BWZ24_25775) ftsN 4540180..4541139 (+) 960 WP_000068834.1 cell division protein FtsN -
  BWZ24_RS23765 (BWZ24_25780) hslV 4541232..4541762 (+) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  BWZ24_RS23770 (BWZ24_25785) hslU 4541772..4543103 (+) 1332 WP_001293343.1 HslU--HslV peptidase ATPase subunit -
  BWZ24_RS23775 (BWZ24_25790) menA 4543170..4544096 (+) 927 WP_000139496.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  BWZ24_RS23780 (BWZ24_25795) rraA 4544189..4544674 (+) 486 WP_000872908.1 ribonuclease E activity regulator RraA -
  BWZ24_RS23785 (BWZ24_25800) zapB 4544759..4545004 (-) 246 WP_001296623.1 septal ring assembly protein ZapB -

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 37609.51 Da        Isoelectric Point: 6.3842

>NTDB_id=180252 BWZ24_RS23755 WP_052971228.1 4539063..4540082(+) (cytR) [Escherichia coli strain XH988]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRA

Nucleotide


Download         Length: 1020 bp        

>NTDB_id=180252 BWZ24_RS23755 WP_052971228.1 4539063..4540082(+) (cytR) [Escherichia coli strain XH988]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAACCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGCTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCACTGTGTCACTATCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

64.179

98.82

0.634
  cytR Vibrio cholerae C6706

65.443

96.46

0.631