Detailed information NTG0180223

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FORC36_RS12885
• Genome accession: NZ_CP015512
• Coordinates: 2683759..2684751 (-)
• Length: 330 a.a.
• NCBI ID: WP_011151147.1
• Uniprot ID: Q7MHR1
• Organism: Vibrio vulnificus strain FORC_036
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2678759..2689751

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC36_RS12865 (FORC36_2414)	recX	2678787..2679248 (-)	462	WP_085761334.1	recombination regulator RecX	-
FORC36_RS12870 (FORC36_2415)	recA	2679352..2680401 (-)	1050	WP_011079524.1	recombinase RecA	Machinery gene
FORC36_RS12875 (FORC36_2416)	pncC	2680535..2681038 (-)	504	WP_085761335.1	nicotinamide-nucleotide amidase	-
FORC36_RS12880 (FORC36_2417)	mutS	2681122..2683683 (+)	2562	WP_047108840.1	DNA mismatch repair protein MutS	-
FORC36_RS12885 (FORC36_2418)	rpoS	2683759..2684751 (-)	993	WP_011151147.1	RNA polymerase sigma factor RpoS	Regulator
FORC36_RS12890 (FORC36_2419)	-	2684832..2685728 (-)	897	WP_065090087.1	peptidoglycan DD-metalloendopeptidase family protein	-
FORC36_RS12895 (FORC36_2420)	-	2685772..2686398 (-)	627	WP_011079519.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FORC36_RS12900 (FORC36_2421)	surE	2686401..2687168 (-)	768	WP_039554647.1	5'/3'-nucleotidase SurE	-
FORC36_RS12905 (FORC36_2422)	truD	2687174..2688217 (-)	1044	WP_085761336.1	tRNA pseudouridine(13) synthase TruD	-
FORC36_RS12910 (FORC36_2423)	ispF	2688253..2688729 (-)	477	WP_011151152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FORC36_RS12915 (FORC36_2424)	ispD	2688726..2689439 (-)	714	WP_039554651.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FORC36_RS12920 (FORC36_2425)	ftsB	2689439..2689720 (-)	282	WP_011079514.1	cell division protein FtsB	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38027.06 Da
• Isoelectric Point: 4.4761

>NTDB_id=180223 FORC36_RS12885 WP_011151147.1 2683759..2684751(-) (rpoS) [Vibrio vulnificus strain FORC_036]
MSISNTVTKVKDFDVNQMDDDFNDDIEINEKEDLTEEKVTLREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRA
LRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTR
TIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANN
SDPEVSTQDEDMRVSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGQEIGLTRERVRQIQVEGLRRLREVLIKQGLN
MENLFDIDMD

Nucleotide

• Length: 993 bp

>NTDB_id=180223 FORC36_RS12885 WP_011151147.1 2683759..2684751(-) (rpoS) [Vibrio vulnificus strain FORC_036]
ATGAGTATCAGCAACACAGTCACCAAAGTTAAAGATTTCGATGTTAATCAGATGGATGATGATTTTAACGACGATATCGA
GATTAATGAAAAAGAAGATCTTACCGAAGAAAAAGTCACACTTCGCGAGGAGTTTGACGCCAGCAACAAGAGCTTAGATG
CGACACAGCTTTATCTAGGAGAAATTGGTTTTTCTCCACTATTAACCGCAGAAGAAGAAGTTCTTTATGCTCGACGTGCA
TTACGAGGCGATGAAGCCGCACGTAAACGTATGATTGAAAGTAACTTACGTCTAGTGGTTAAGATTTCCCGCCGTTACAG
TAATCGCGGTCTTGCACTGCTTGATTTGATTGAAGAGGGTAACCTTGGTTTGATCCGCGCGGTAGAGAAATTCGATCCAG
AGCGTGGTTTCCGCTTCTCAACTTACGCGACATGGTGGATTCGCCAAACCATCGAACGCGCTTTAATGAATCAGACTCGA
ACCATCCGTTTACCTATCCATGTTGTTAAAGAGCTGAACATTTATCTACGTACGGCGCGTGAACTTTCTCAAAAACTCGA
TCATGAGCCAACCGCTGAAGAGATCGCTGCACAACTGGATATTCCGGTTGACGATGTGAGCAAAATGCTGCGTTTGAACG
AGCGCATTAGTTCCGTCGATACTCCAATTGGTGGAGATGGAGAGAAGGCGTTACTGGATATTATCCCTGATGCAAACAAC
TCTGACCCAGAGGTTTCAACGCAAGATGAAGACATGCGTGTTTCCTTGATTCATTGGTTGGAAGAGCTCAATCCGAAACA
AAAAGAAGTGTTGGCACGTCGCTTTGGTTTGTTGGGTTATGAGCCTTCAACGCTGGAAGAGGTTGGGCAAGAGATTGGTT
TAACTCGCGAGCGAGTACGCCAGATTCAGGTTGAAGGGTTACGTCGCCTCCGTGAAGTTCTGATCAAACAAGGTCTGAAT
ATGGAAAACTTGTTTGATATCGATATGGATTGA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (171-244)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (53-86)

• Sigma-70, region 4 (Sigma70_r4) (259-312)

• Sigma-70 region 2 (Sigma70_r2) (91-160)

3D structure

• AlphaFold DB: Q7MHR1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.899	100	0.836