Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FORC36_RS12765 Genome accession   NZ_CP015512
Coordinates   2661885..2662403 (-) Length   172 a.a.
NCBI ID   WP_011079537.1    Uniprot ID   Q7MHS7
Organism   Vibrio vulnificus strain FORC_036     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2656885..2667403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC36_RS12740 (FORC36_2397) rimM 2656960..2657508 (-) 549 WP_011079542.1 ribosome maturation factor RimM -
  FORC36_RS12745 (FORC36_2398) rpsP 2657524..2657772 (-) 249 WP_011079541.1 30S ribosomal protein S16 -
  FORC36_RS12750 (FORC36_2399) ffh 2658047..2659423 (-) 1377 WP_011079540.1 signal recognition particle protein -
  FORC36_RS12755 (FORC36_2400) - 2659637..2660431 (+) 795 WP_011079539.1 cytochrome C assembly family protein -
  FORC36_RS12760 (FORC36_2401) - 2660518..2661795 (+) 1278 WP_011079538.1 HlyC/CorC family transporter -
  FORC36_RS12765 (FORC36_2402) luxS 2661885..2662403 (-) 519 WP_011079537.1 S-ribosylhomocysteine lyase Regulator
  FORC36_RS12770 (FORC36_2403) - 2662454..2663059 (-) 606 WP_223370886.1 hypothetical protein -
  FORC36_RS12775 (FORC36_2404) gshA 2663097..2664662 (-) 1566 WP_085761480.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18899.69 Da        Isoelectric Point: 5.2384

>NTDB_id=180220 FORC36_RS12765 WP_011079537.1 2661885..2662403(-) (luxS) [Vibrio vulnificus strain FORC_036]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRKHLNGASVEIIDISP
MGCRTGFYMSLIGAPSEQDVASAWTASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAQNILAAGISVNKNDELA
LPEAMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=180220 FORC36_RS12765 WP_011079537.1 2661885..2662403(-) (luxS) [Vibrio vulnificus strain FORC_036]
ATGCCATTATTAGATAGTTTTACCGTTGACCACACTCGCATGCATGCACCCGCGGTGCGTGTGGCAAAAACCATGCAGAC
GCCAAAAGGCGACACCATTACCGTGTTTGACTTACGTTTCACTGCACCTAACAAAGATATTTTGTCAGAGAAAGGCATTC
ACACGTTAGAGCACCTGTACGCAGGCTTTATGCGTAAGCATCTTAATGGCGCATCGGTTGAGATCATCGATATCTCACCG
ATGGGTTGTCGTACCGGTTTCTACATGAGCTTAATTGGTGCGCCGAGTGAGCAAGACGTGGCATCTGCGTGGACGGCTTC
GATGGAAGATGTGTTGAAAGTGGAAAGCCAAAACAAGATCCCTGAGTTGAACGAGTATCAGTGTGGTACCGCGGCCATGC
ACTCGCTAGATGAAGCGAAGCAAATCGCGCAGAACATTCTGGCAGCAGGAATTTCGGTGAATAAAAACGATGAACTGGCA
TTGCCAGAAGCGATGTTGAAAGAGCTCAAAGTGGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment