Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BWZ24_RS07360 Genome accession   NZ_CP019355
Coordinates   1123052..1123567 (+) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain XH988     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1118052..1128567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWZ24_RS07315 (BWZ24_07980) csrA 1118639..1118824 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  BWZ24_RS07345 (BWZ24_08010) yqaB 1120282..1120848 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  BWZ24_RS07350 (BWZ24_08015) yqaA 1120845..1121273 (+) 429 WP_001287457.1 YqaA family protein -
  BWZ24_RS07355 (BWZ24_08020) gshA 1121346..1122902 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  BWZ24_RS07360 (BWZ24_08025) luxS 1123052..1123567 (+) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  BWZ24_RS07365 (BWZ24_08030) emrB 1123631..1125169 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  BWZ24_RS07370 (BWZ24_08035) emrA 1125186..1126358 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  BWZ24_RS07375 (BWZ24_08040) emrR 1126485..1127015 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  BWZ24_RS07380 (BWZ24_08045) ygaH 1127106..1127441 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  BWZ24_RS07385 (BWZ24_08050) ygaZ 1127431..1128168 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=180207 BWZ24_RS07360 WP_001130207.1 1123052..1123567(+) (luxS) [Escherichia coli strain XH988]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=180207 BWZ24_RS07360 WP_001130207.1 1123052..1123567(+) (luxS) [Escherichia coli strain XH988]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731