Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   FORC36_RS05000 Genome accession   NZ_CP015512
Coordinates   1064196..1065596 (+) Length   466 a.a.
NCBI ID   WP_011149911.1    Uniprot ID   A0AAN1PPC9
Organism   Vibrio vulnificus strain FORC_036     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1059196..1070596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC36_RS04975 (FORC36_0951) rsxB 1059834..1060430 (-) 597 WP_011080896.1 electron transport complex subunit RsxB -
  FORC36_RS04980 (FORC36_0952) rsxA 1060432..1061010 (-) 579 WP_011080895.1 electron transport complex subunit RsxA -
  FORC36_RS04990 (FORC36_0953) - 1061608..1061793 (+) 186 WP_085760859.1 hypothetical protein -
  FORC36_RS04995 (FORC36_0954) uvrB 1061892..1063922 (+) 2031 WP_013572115.1 excinuclease ABC subunit UvrB -
  FORC36_RS05000 (FORC36_0955) luxO 1064196..1065596 (+) 1401 WP_011149911.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  FORC36_RS05005 (FORC36_0956) luxU 1065596..1065943 (+) 348 WP_011080891.1 quorum-sensing phosphorelay protein LuxU -
  FORC36_RS05010 (FORC36_0957) - 1066044..1066934 (-) 891 WP_011080890.1 YvcK family protein -
  FORC36_RS05015 (FORC36_0958) moaA 1067250..1068239 (+) 990 WP_039553216.1 GTP 3',8-cyclase MoaA -
  FORC36_RS05020 (FORC36_0959) moaB 1068320..1068832 (+) 513 WP_011080888.1 molybdenum cofactor biosynthesis protein B -
  FORC36_RS05025 (FORC36_0960) moaC 1068843..1069322 (+) 480 WP_011080887.1 cyclic pyranopterin monophosphate synthase MoaC -
  FORC36_RS05030 (FORC36_0961) moaD 1069319..1069564 (+) 246 WP_011080886.1 molybdopterin synthase sulfur carrier subunit -
  FORC36_RS05035 (FORC36_0962) moaE 1069566..1070021 (+) 456 WP_011080885.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 52120.68 Da        Isoelectric Point: 6.2540

>NTDB_id=180206 FORC36_RS05000 WP_011149911.1 1064196..1065596(+) (luxO) [Vibrio vulnificus strain FORC_036]
MQQITTTKQRYLLMVEDTASVAALYRSYLMPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLHAVKASHP
DVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKASKLKNDADSAGSQNYQGFIGSSQKMQQVYRTI
DSAASSKASIFITGESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGG
TLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRER
GEDVIEIAYSLLGYMSHEEGKNFVRFSQPVIDRFNEYEWPGNVRQLQNVLRNVVVLNNGKEITMEMLPPPLNQPFERKES
VQPDLSELISVRDICPLWLTEKLAIEQAIKACDGNIPRAAGYLDVSPSTIYRKLQAWNEKEEKQKA

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=180206 FORC36_RS05000 WP_011149911.1 1064196..1065596(+) (luxO) [Vibrio vulnificus strain FORC_036]
ATGCAACAAATAACGACAACGAAACAGCGCTACTTGCTGATGGTAGAAGACACCGCTTCTGTCGCAGCCCTCTATCGCTC
CTATCTCATGCCATTGGGTATCGATATCAATATCGTGGGTACTGGGCGTGACGCGATAGACAGTTTAAAACATCGCATTC
CAGATCTTATTCTGCTGGATTTACGTCTACCGGACATGACGGGAATGGACGTATTGCATGCAGTGAAAGCAAGTCACCCT
GATGTTCCTATCATTTTCATGACCGCACACGGCTCGATCGATACTGCCGTTGAAGCAATGCGACATGGTTCTCAGGATTT
TCTTATCAAGCCATGCGAAGCGGATCGCTTGAGGGTCACGGTAAACAACGCTATCCGCAAAGCGAGCAAATTGAAGAATG
ATGCGGACAGTGCAGGCAGCCAAAATTATCAAGGCTTTATCGGCAGTAGCCAAAAAATGCAGCAGGTTTATCGCACCATT
GACTCCGCGGCGAGCAGTAAAGCAAGCATCTTTATCACAGGTGAAAGTGGTACAGGTAAAGAGGTGTGCGCAGAAGCCAT
TCATGCAGCCAGTCGACGTGGAGACAAGCCATTTATCGCGATTAACTGTGCAGCGATCCCCAAGGATTTGATTGAAAGCG
AGCTATTTGGTCATGTCAAAGGTGCGTTTACCGGCGCTGCGACCGATCGCCAAGGGGCGGCAGAGCTCGCTGATGGGGGC
ACACTTTTCCTGGATGAGCTGTGTGAAATGGACTTGGATCTGCAAACAAAATTGCTGCGTTTTATCCAAACGGGTACTTT
CCAAAAAGTAGGCTCTTCAAAAATGAAGAGTGTTGACGTGCGTTTTGTGTGCGCGACAAACCGAGATCCCTGGAAAGAGG
TACAAGAAGGGCGCTTTCGTGAAGATTTGTACTACCGACTTTATGTGATTCCACTGCACTTGCCACCACTTCGTGAACGT
GGAGAGGATGTCATCGAGATCGCTTACTCGTTACTGGGTTACATGTCACATGAGGAAGGGAAAAACTTTGTTCGTTTCTC
TCAACCTGTGATAGATAGATTTAACGAATATGAGTGGCCAGGTAATGTGCGTCAGTTACAAAATGTGCTGCGTAATGTCG
TGGTTCTTAACAACGGTAAAGAGATTACCATGGAGATGCTGCCGCCTCCTTTGAACCAGCCCTTTGAACGCAAAGAAAGT
GTGCAGCCTGATCTGAGTGAGTTGATTTCCGTCAGGGATATTTGTCCATTGTGGTTGACAGAGAAACTGGCGATTGAACA
AGCGATCAAAGCGTGTGATGGTAACATTCCGAGAGCCGCTGGCTATCTGGATGTCAGCCCGTCAACAATTTATCGCAAGT
TACAGGCGTGGAACGAAAAAGAAGAAAAACAGAAAGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(417-457)

Response regulator receiver domain (Response_reg)

(13-121)

Sigma-54 interaction domain (Sigma54_activat)

(147-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

85.714

96.137

0.824

Multiple sequence alignment