Detailed information NTG0180171

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: A361_RS21420
• Genome accession: NZ_CP015506
• Coordinates: 4247931..4250357 (-)
• Length: 808 a.a.
• NCBI ID: WP_019382897.1
• Uniprot ID: A0A161J618
• Organism: Cytobacillus oceanisediminis 2691
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 4242931..4255357

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A361_RS21405 (A361_21410)	-	4245334..4246422 (-)	1089	WP_019382894.1	AI-2E family transporter	-
A361_RS29540	-	4246596..4246721 (-)	126	WP_236887920.1	YrzQ family protein	-
A361_RS21410 (A361_21415)	-	4246737..4246928 (-)	192	WP_009333064.1	hypothetical protein	-
A361_RS21415 (A361_21420)	-	4246944..4247414 (-)	471	WP_009333065.1	PRC-barrel domain-containing protein	-
A361_RS30615	-	4247516..4247668 (-)	153	WP_009333066.1	hypothetical protein	-
A361_RS30620	-	4247706..4247867 (-)	162	WP_019382896.1	hypothetical protein	-
A361_RS21420 (A361_21425)	recD2	4247931..4250357 (-)	2427	WP_019382897.1	ATP-dependent RecD-like DNA helicase	Machinery gene
A361_RS21425 (A361_21430)	-	4250382..4251047 (-)	666	WP_019382898.1	tetratricopeptide repeat protein	-
A361_RS21430 (A361_21435)	mnmA	4251163..4252278 (-)	1116	WP_019382899.1	tRNA 2-thiouridine(34) synthase MnmA	-
A361_RS21435 (A361_21440)	-	4252335..4253477 (-)	1143	WP_019382900.1	cysteine desulfurase family protein	-
A361_RS21440 (A361_21445)	cymR	4253546..4253965 (-)	420	WP_019382901.1	cysteine metabolism transcriptional regulator CymR	-
A361_RS21445 (A361_21450)	-	4253965..4254651 (-)	687	WP_009333073.1	YczE/YyaS/YitT family protein	-

Sequence

Protein

• Length: 808 a.a.
• Molecular weight: 91344.50 Da
• Isoelectric Point: 4.9779

>NTDB_id=180171 A361_RS21420 WP_019382897.1 4247931..4250357(-) (recD2) [Cytobacillus oceanisediminis 2691]
MEKQDSMDLFAEQGKFIKGRHLVTIFHNEQNLYTVVRIRVDETNDSYDEKEAVITGYLPKMHEQETYIFYGEFKDHPKFG
VQFHASHYRKDLPQTKQGVANYLSSELFKGIGKKTAEQIVETLGEDAITRILNQPSLLDKVPKLSPEKAKLLYDTLMEHQ
GLEQAMIALNQYGFGPQLSMRIYQVYKEMTIEVLQSNPYKLVEDIEGVGFGRADELGYQIGISGNHPDRIKAACLYILEM
ESMQAGHVYTEAKPLLQSVKKLLEENKRDSIEYRDISNELIKLEEEGKIMAEGQKIYLPSLYFSEKGLVTNIKRILKQTQ
YDEQFPESEFLLALGNLEERLGVQYAPTQKEAIQTALMSPMLILTGGPGTGKTTVIKGIVELYAELHGCSLEPKDYKKEE
PFPFLLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGTEGFDRHEESPLEGRILIVDETSMVDVWLANQLFKALPENMQVI
LVGDEDQLPSVGPGQVLKDLLRSERIPTVRLTDIYRQAEGSSIIELAHEMKKGKLPANISAQQTDRSFIKCQPGQIADVV
EKVVLNAKKKGYSSKDIQVLAPMYRGPAGIDRLNEILQEILNPNPDGTRKELSFGDVKYRIGDKVLQLVNQPENNVFNGD
MGEIVSIFYAKENTEKQDMIVVSFDGAEATYTRQDLNQITHAYCCSVHKSQGSEFPIVILPIVKSYYRMLRRNLLYTAIT
RSRQFLILCGEEDALKIGVERADEQARLTTLSEKLRDAIPLNGETIQEDTAELSLPETLTLEERLLQADPMIGMGNITPY
DFMEKEYS

Nucleotide

• Length: 2427 bp

>NTDB_id=180171 A361_RS21420 WP_019382897.1 4247931..4250357(-) (recD2) [Cytobacillus oceanisediminis 2691]
ATGGAGAAACAGGATTCCATGGATCTTTTTGCCGAACAGGGAAAGTTCATAAAAGGCAGACATCTTGTCACAATCTTTCA
TAATGAGCAAAACTTATATACGGTTGTGCGAATCCGGGTTGATGAAACGAATGACTCTTATGATGAAAAAGAAGCGGTCA
TTACAGGTTATCTGCCAAAGATGCATGAGCAGGAAACGTATATTTTCTACGGTGAATTCAAGGATCACCCTAAGTTCGGT
GTCCAATTCCACGCAAGCCATTACCGGAAAGATCTTCCCCAGACCAAACAAGGTGTAGCCAATTATTTATCAAGCGAATT
ATTTAAAGGGATTGGAAAGAAAACCGCCGAGCAAATCGTTGAAACACTTGGCGAAGATGCGATTACACGCATTCTGAATC
AGCCGTCTCTTCTCGATAAGGTTCCAAAACTGTCACCTGAAAAAGCAAAATTGCTTTACGACACGCTTATGGAACATCAA
GGCCTTGAGCAAGCCATGATTGCGCTAAATCAATATGGTTTTGGTCCGCAGCTTTCCATGAGAATTTATCAAGTATATAA
AGAAATGACGATTGAAGTCCTCCAAAGCAATCCGTATAAGCTGGTTGAGGATATAGAAGGAGTCGGCTTTGGCCGTGCAG
ATGAACTGGGATATCAAATCGGCATATCAGGTAATCATCCTGATCGTATTAAAGCAGCCTGCCTCTACATACTTGAAATG
GAAAGCATGCAGGCAGGCCATGTTTATACTGAAGCAAAACCTCTTCTGCAAAGTGTGAAGAAGCTTTTAGAAGAAAATAA
GCGTGATAGCATTGAATACAGGGATATATCCAATGAACTGATTAAGCTTGAAGAGGAAGGGAAAATCATGGCTGAAGGCC
AAAAAATATACCTTCCATCCCTTTACTTTTCTGAAAAGGGACTTGTAACCAATATTAAACGGATCCTTAAGCAAACACAA
TATGATGAACAGTTTCCGGAGTCGGAATTTCTTTTGGCCCTTGGCAATCTGGAGGAACGTCTGGGTGTTCAGTACGCCCC
GACCCAAAAAGAAGCCATTCAAACAGCTCTTATGTCTCCTATGCTGATACTGACTGGCGGCCCTGGTACAGGAAAAACAA
CCGTTATTAAAGGAATTGTTGAGTTATATGCCGAACTGCATGGCTGCTCCCTGGAGCCAAAAGACTATAAAAAGGAAGAG
CCTTTTCCCTTCCTGCTGGCTGCGCCTACAGGAAGGGCTGCAAAACGGATGGCCGAGTCAACAGGGCTGCCTGCGGTAAC
CATTCACCGCCTGCTTGGCTGGAATGGGACCGAAGGGTTTGACCGGCATGAAGAGAGTCCATTGGAAGGCAGGATTTTAA
TTGTAGATGAGACATCAATGGTTGATGTTTGGCTTGCTAATCAGCTTTTCAAGGCTCTCCCTGAAAATATGCAGGTGATC
CTTGTGGGGGATGAAGATCAGCTGCCCTCAGTGGGGCCAGGCCAGGTTTTAAAAGATCTTTTGCGTTCAGAACGTATTCC
TACCGTTCGTTTAACAGATATATACAGGCAGGCTGAAGGATCCTCAATCATTGAATTGGCTCATGAAATGAAAAAAGGCA
AACTTCCGGCGAACATTTCTGCACAGCAGACAGATCGTTCCTTTATCAAATGCCAGCCGGGCCAAATTGCGGATGTTGTT
GAAAAAGTTGTTCTGAATGCCAAGAAGAAAGGTTATTCTTCAAAAGATATTCAGGTGCTTGCCCCTATGTACCGCGGACC
TGCAGGAATTGACAGGCTAAACGAAATATTGCAGGAAATACTAAATCCAAATCCTGATGGAACGAGAAAAGAGCTGTCCT
TCGGTGATGTGAAATACAGAATCGGCGATAAAGTCCTTCAGCTTGTCAATCAGCCTGAGAATAATGTGTTTAATGGGGAT
ATGGGTGAGATTGTTTCTATTTTTTACGCAAAGGAAAATACGGAAAAACAGGATATGATTGTCGTATCCTTCGATGGTGC
AGAAGCTACTTATACAAGGCAGGATCTTAATCAGATCACACATGCCTACTGCTGTTCAGTCCATAAATCCCAGGGAAGTG
AATTCCCTATCGTCATTTTGCCAATTGTTAAAAGCTATTACAGGATGCTTAGGAGAAATCTTCTTTATACCGCCATTACC
CGCAGCAGACAGTTTTTGATACTGTGCGGTGAAGAAGATGCGTTGAAAATCGGTGTGGAACGTGCGGATGAACAGGCCCG
ACTGACAACTCTTTCAGAAAAGCTTAGAGATGCCATTCCATTAAATGGTGAAACAATACAGGAAGATACAGCAGAGTTAT
CCCTGCCTGAAACCTTAACCCTTGAAGAAAGGCTTCTCCAAGCCGATCCAATGATAGGAATGGGAAATATAACACCGTAT
GATTTTATGGAAAAAGAATATAGCTAA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (158-249)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (593-664)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (681-729)

• AAA domain (AAA_30) (345-552)

3D structure

• AlphaFold DB: A0A161J618

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	62.108	98.639	0.613