Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   A361_RS20145 Genome accession   NZ_CP015506
Coordinates   4003388..4005070 (-) Length   560 a.a.
NCBI ID   WP_019380198.1    Uniprot ID   -
Organism   Cytobacillus oceanisediminis 2691     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3998388..4010070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A361_RS20130 (A361_20135) - 4000231..4000467 (+) 237 WP_019380202.1 DUF2627 domain-containing protein -
  A361_RS29155 - 4000487..4000627 (+) 141 WP_009332885.1 YycC family protein -
  A361_RS20135 (A361_20140) spo0A 4000760..4001548 (-) 789 WP_019380201.1 sporulation transcription factor Spo0A -
  A361_RS20140 (A361_20145) spoIVB 4001916..4003205 (-) 1290 WP_019380200.1 SpoIVB peptidase -
  A361_RS20145 (A361_20150) recN 4003388..4005070 (-) 1683 WP_019380198.1 DNA repair protein RecN Machinery gene
  A361_RS20150 (A361_20155) ahrC 4005545..4005994 (-) 450 WP_009332889.1 transcriptional regulator AhrC/ArgR -
  A361_RS20155 (A361_20160) - 4006263..4007105 (-) 843 WP_009332890.1 TlyA family RNA methyltransferase -
  A361_RS20160 (A361_20165) dxs 4007109..4009001 (-) 1893 WP_019380196.1 1-deoxy-D-xylulose-5-phosphate synthase -
  A361_RS30025 - 4009164..4009322 (+) 159 WP_019380195.1 hypothetical protein -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63303.38 Da        Isoelectric Point: 5.1594

>NTDB_id=180168 A361_RS20145 WP_019380198.1 4003388..4005070(-) (recN) [Cytobacillus oceanisediminis 2691]
MLNEISIRNFAIIEALSVSFEKGLTVLTGETGAGKSIIIDAIHLLAGGRGSAEFVRHGEDKAEIEGLFILDDLKHPCYKR
SAEFGIEIEDGMIVLRRDISKTGKSVCRVNGKLVTISVLREIGSSLIDIHGQHEHQELMDETFHLPLLDQFGGSKLSAAL
TEYQDIYRLYENTLKKLKNLSENEQQMAHRLDLIQFQLDEIQSAQLKLNEDEDLIEEKRKLSNFERIFDSLQSGYNALQG
EQKGLDWIGMVMGYMNDAAELDPAYKEIAENVANSFYLLEDAARSLRNEMDFMEYDPQRLNEIESRLNEINGLKRKYGKT
VEEVLEYSAQIEEEIETLLNKETHIDKLQKEVAALKKDLLVEGEELSKLRRKSALKLTKLIHKELKELYMEKTVFEVRFF
SDSEVFLKNGIDRAEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKIH
HVSVDSQVLCISHLPQVAAMADTHLFIAKNTKDGRTKTTVKPLTEDEKIKEIGRMISGVEITDLTKEHAKELLHLANQLK

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=180168 A361_RS20145 WP_019380198.1 4003388..4005070(-) (recN) [Cytobacillus oceanisediminis 2691]
TTGTTAAACGAAATATCCATACGAAATTTTGCCATAATCGAAGCCCTTTCTGTCTCATTTGAAAAGGGCTTAACTGTTTT
AACTGGTGAAACAGGGGCGGGAAAGTCCATCATTATCGATGCCATTCACTTGCTGGCTGGAGGCAGGGGATCTGCAGAAT
TTGTCCGCCATGGTGAGGATAAGGCTGAAATTGAGGGGCTTTTTATCCTGGATGATCTTAAACATCCTTGCTATAAACGG
TCTGCTGAATTTGGGATAGAGATTGAAGATGGAATGATTGTTCTCCGCAGAGATATATCAAAGACAGGAAAAAGCGTCTG
CAGAGTGAACGGAAAACTTGTCACTATATCTGTATTGAGAGAAATCGGAAGTTCCCTTATTGATATACATGGCCAGCACG
AACATCAGGAATTAATGGATGAAACCTTTCATCTTCCTCTCCTCGATCAGTTTGGGGGATCCAAATTATCCGCTGCTTTA
ACTGAATACCAGGATATCTACAGGTTATATGAAAACACACTGAAAAAGCTTAAAAATTTAAGTGAGAATGAACAGCAAAT
GGCGCACCGGCTTGATTTAATTCAATTTCAGCTGGATGAAATTCAATCTGCTCAGCTTAAATTGAACGAAGATGAAGATT
TGATTGAAGAAAAAAGAAAGCTTTCCAATTTTGAACGTATTTTTGATTCTCTTCAGTCAGGCTATAATGCTCTTCAAGGA
GAACAAAAAGGGCTTGATTGGATCGGAATGGTTATGGGCTATATGAATGATGCCGCGGAACTGGACCCCGCCTATAAAGA
AATAGCGGAAAATGTGGCAAACAGTTTTTATTTGCTTGAAGATGCAGCGAGATCACTCCGCAATGAAATGGACTTTATGG
AATATGATCCCCAAAGACTTAATGAGATAGAAAGCAGATTGAATGAAATTAATGGGTTGAAAAGAAAATATGGAAAAACG
GTTGAAGAAGTGCTGGAATACTCTGCACAGATAGAAGAAGAAATTGAAACCCTGCTAAATAAAGAAACCCATATTGATAA
GCTGCAAAAGGAAGTTGCTGCCCTGAAAAAAGACCTTCTGGTTGAAGGAGAAGAATTGAGCAAGCTGCGCAGAAAATCTG
CCCTTAAACTTACCAAGTTAATTCACAAAGAGCTTAAGGAATTATATATGGAAAAGACAGTCTTTGAGGTCAGATTCTTT
TCTGATTCCGAAGTCTTCCTGAAAAACGGAATTGACAGGGCTGAGTTCTACATTTCCACCAATCCGGGAGAACCGCTTAA
GCCGCTGTCTAAAATTGCATCAGGCGGTGAATTGTCCCGAATCATGCTTGCTTTAAAGAGCATATTTTCAAAGCATCAGG
GTGTCACAAGTATTATTTTCGATGAGGTGGATACAGGCGTGAGCGGCAGGGTTGCACAAGCCATCGCGGAAAAGATTCAT
CACGTTTCCGTGGATTCACAGGTTCTGTGCATCTCTCATCTTCCTCAGGTTGCGGCCATGGCAGATACTCATTTATTTAT
TGCTAAAAACACAAAGGATGGGCGGACAAAAACAACAGTAAAACCGCTCACTGAAGATGAGAAAATCAAAGAAATCGGCC
GTATGATTTCCGGGGTGGAAATTACTGATTTAACAAAAGAGCATGCGAAAGAGCTGCTGCACCTGGCTAATCAGCTAAAG
TAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

62.892

100

0.645

Multiple sequence alignment