Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   A361_RS07590 Genome accession   NZ_CP015506
Coordinates   1487047..1488864 (+) Length   605 a.a.
NCBI ID   WP_019381490.1    Uniprot ID   A0A160M988
Organism   Cytobacillus oceanisediminis 2691     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1482047..1493864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A361_RS07565 (A361_07565) - 1482587..1482775 (-) 189 WP_009331206.1 hypothetical protein -
  A361_RS07570 (A361_07570) - 1483024..1483599 (+) 576 WP_019381488.1 GNAT family N-acetyltransferase -
  A361_RS07575 (A361_07575) spxA 1484074..1484469 (+) 396 WP_009331204.1 transcriptional regulator SpxA -
  A361_RS07580 (A361_07580) mecA 1484885..1485547 (+) 663 WP_009331203.1 adaptor protein MecA -
  A361_RS07585 (A361_07585) - 1485735..1486925 (+) 1191 WP_019381489.1 competence protein CoiA -
  A361_RS07590 (A361_07590) pepF 1487047..1488864 (+) 1818 WP_019381490.1 oligoendopeptidase F Regulator
  A361_RS30425 - 1488967..1489140 (-) 174 WP_019381491.1 hypothetical protein -
  A361_RS07595 (A361_07595) - 1489441..1490316 (-) 876 WP_019381492.1 ClpXP adapter SpxH family protein -
  A361_RS07600 (A361_07600) - 1490313..1490717 (-) 405 WP_009331199.1 protozoan/cyano globin family protein -
  A361_RS07605 (A361_07605) - 1491166..1491807 (-) 642 WP_019381493.1 lytic transglycosylase domain-containing protein -
  A361_RS07610 (A361_07610) - 1491841..1492431 (-) 591 WP_009331197.1 CYTH domain-containing protein -
  A361_RS07615 (A361_07615) - 1492655..1493020 (+) 366 WP_009331196.1 hypothetical protein -
  A361_RS07620 (A361_07620) - 1493141..1493779 (+) 639 WP_009331195.1 GTP pyrophosphokinase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69921.44 Da        Isoelectric Point: 4.9946

>NTDB_id=180157 A361_RS07590 WP_019381490.1 1487047..1488864(+) (pepF) [Cytobacillus oceanisediminis 2691]
MANETTVKKLPARNEISPEDTWRLEDIFPSDEDWDKEYNEVQKLIPNAGKYQGRLGESAETLYEALQFQDHILSRLGKLY
TYAHMRYDQDTTNSFYQSMDDKIKNLYSEAASVLAYIVPELLAEDEAKIAGFLEEKTELQLYKHSLEEINLQRPHVLSAE
QESLLAQASEVLGASSNTFGMLNNADLEFPSIKDENGEDVEITHGRFIRFLESDEQRVRHDAFKAVYETYGKFRNTFAST
LSGNIKKDNFNAKIRNYESARHAALAANNIPESVYENLVNTINDNLHLLHRYVKLRKKVLGVEELHMYDLYTPLVKEVKM
EIPYKEAKDLILKGLKPLGGDYLNILKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTCNEALLNDYLLKTIDDDKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHKKAQ
NNEALTADSLTKEYYELNKKYFGEEDIVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILQEGQPAVDRYIEF
LKSGSSDYPIEVLKKAGVDMTSSKPIEDACKVFEEKLNEMESLLS

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=180157 A361_RS07590 WP_019381490.1 1487047..1488864(+) (pepF) [Cytobacillus oceanisediminis 2691]
ATGGCTAATGAGACTACTGTGAAGAAACTGCCGGCAAGGAATGAGATTTCACCAGAAGATACCTGGCGTTTGGAGGATAT
TTTTCCTTCTGATGAAGATTGGGACAAGGAATATAATGAAGTGCAAAAGCTAATCCCTAATGCAGGCAAGTATCAAGGCA
GGCTTGGGGAAAGTGCTGAAACATTATATGAAGCGCTGCAGTTTCAGGATCATATACTCTCGCGCCTTGGGAAGCTTTAT
ACATATGCCCATATGCGTTATGACCAGGATACAACAAACTCATTTTATCAGAGCATGGATGACAAAATTAAAAATTTATA
TTCAGAAGCTGCAAGTGTTCTCGCGTATATTGTACCTGAATTGCTTGCTGAGGATGAAGCGAAGATTGCAGGTTTTTTAG
AGGAAAAAACGGAGCTGCAATTATATAAGCACTCCCTTGAGGAAATTAATCTCCAAAGGCCTCATGTATTATCTGCTGAG
CAGGAATCCCTCCTTGCCCAGGCTTCCGAGGTGCTTGGGGCTTCAAGCAATACATTTGGCATGCTGAATAATGCTGATTT
GGAGTTTCCGTCCATTAAGGATGAAAATGGCGAAGATGTTGAAATTACTCATGGAAGATTCATCCGTTTTCTCGAAAGTG
ATGAGCAGCGTGTCCGTCATGATGCATTCAAAGCGGTATATGAGACTTATGGGAAGTTCCGCAATACTTTCGCAAGCACT
CTAAGCGGAAATATTAAAAAGGATAATTTCAATGCAAAGATCCGCAATTATGAATCTGCACGACATGCTGCTCTTGCTGC
GAACAATATTCCTGAAAGTGTTTATGAAAATTTAGTCAATACCATTAACGATAACCTGCACTTACTTCACCGATATGTCA
AACTCCGTAAAAAGGTTCTTGGGGTCGAGGAGCTTCATATGTATGATCTTTACACTCCTTTGGTGAAGGAAGTAAAAATG
GAAATCCCATACAAAGAAGCAAAAGATCTAATCTTAAAAGGACTGAAGCCGCTTGGTGGGGACTACTTAAATATTCTAAA
AGAGGGCTTTGAAAATCGCTGGGTAGATGTTCATGAGAATAAGGGCAAAAGAAGCGGTGCCTATTCATCGGGAACATATG
GCACAAATCCATATATACTGATGAACTGGCATGACAATGTAAACAATCTATTTACCCTTGCTCACGAGTTTGGGCATTCT
GTTCACAGCTATTACACAAGAAAATATCAGCCATATCCATATGGAAATTATTCAATTTTTGTTGCAGAGGTTGCATCCAC
ATGTAATGAAGCCCTCTTAAATGATTATCTGCTCAAAACAATAGATGATGATAAGAAGCGTTTGTATCTTCTGAATCATT
ATCTTGAAGGCTTTAGGGGAACTGTTTTCCGCCAGACAATGTTTGCAGAGTTTGAACATCTCATCCATAAAAAGGCGCAA
AACAATGAAGCTTTAACCGCAGATTCATTGACAAAAGAATATTATGAGCTCAATAAGAAGTATTTTGGGGAAGAAGACAT
CGTTATTGATGAAGAAATCGGCCTGGAATGGTCCAGAATCCCGCATTTCTACTATAATTATTATGTTTATCAGTATGCAA
CAGGCTTCAGTGCGGCAACTGCATTAAGCAAGCAAATTCTTCAGGAAGGTCAGCCTGCAGTTGACAGATACATTGAATTC
CTGAAATCCGGCAGCTCAGATTATCCAATAGAGGTGCTTAAGAAAGCTGGTGTTGATATGACGAGCAGCAAGCCGATTGA
AGATGCCTGCAAAGTATTTGAGGAAAAGCTTAACGAAATGGAAAGCTTGCTTTCTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A160M988

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.495

98.182

0.486

Multiple sequence alignment