Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   A361_RS01125 Genome accession   NZ_CP015506
Coordinates   203849..204802 (+) Length   317 a.a.
NCBI ID   WP_009336388.1    Uniprot ID   A0A160M628
Organism   Cytobacillus oceanisediminis 2691     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 201737..202899 203849..204802 flank 950


Gene organization within MGE regions


Location: 201737..204802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A361_RS01115 (A361_01115) - 201737..202899 (+) 1163 WP_099049166.1 IS3 family transposase -
  A361_RS01120 (A361_01120) - 203118..203507 (+) 390 WP_009336391.1 ribbon-helix-helix protein, CopG family -
  A361_RS01125 (A361_01125) ceuB 203849..204802 (+) 954 WP_009336388.1 ABC transporter permease Machinery gene

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34723.77 Da        Isoelectric Point: 9.3878

>NTDB_id=180140 A361_RS01125 WP_009336388.1 203849..204802(+) (ceuB) [Cytobacillus oceanisediminis 2691]
MRLWMLGIAAIVLSFISLFIGAIDITPKDLLNWESDETHIFLISRIPRLLAIILAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDAAKLGILISMLFFTNVTYTQQVIFSFAFALAGTFLFMQILDRIKFKDVIFVPLIGIMYGNILSSITTFFGYEADLL
QNISSWLMGSFTLIIAGRYELLYVSIPAIILAYLYANKFTVAGMGEDFARNLGLSYKLVLNIGLVLVAVISTTVVLTVGV
IPFLGLIVPNIVSLYLGDNLRKTIPHTAVLGIVFLLICDILGRIIIHPYEIPVNVTVAVIGSAIFLTMLLRGRAYAK

Nucleotide


Download         Length: 954 bp        

>NTDB_id=180140 A361_RS01125 WP_009336388.1 203849..204802(+) (ceuB) [Cytobacillus oceanisediminis 2691]
ATGAGATTATGGATGTTAGGAATTGCAGCCATCGTTCTGTCTTTTATCTCGCTATTTATCGGAGCAATAGATATAACGCC
AAAGGATCTGCTCAATTGGGAATCAGATGAAACACATATTTTCCTTATCAGCCGCATCCCACGGTTATTAGCGATAATAT
TAGCGGGGGCAGGGATGAGTATTGCCGGTTTAATTATGCAGTCTTTAAGCCGAAATAAGTTTGTATCACCAACAACTGCT
GGAACTTTGGATGCAGCAAAACTGGGTATTTTAATTTCCATGCTGTTTTTTACGAATGTAACCTATACACAGCAAGTTAT
TTTTAGTTTTGCCTTTGCTTTAGCGGGTACATTTCTCTTCATGCAGATTTTAGATCGTATAAAATTTAAAGATGTTATCT
TTGTTCCGTTAATTGGAATTATGTATGGAAATATACTATCTTCTATTACAACGTTCTTTGGATATGAAGCGGATCTGCTG
CAAAATATATCTTCCTGGCTTATGGGAAGTTTCACTTTGATTATTGCTGGCCGTTATGAGCTTTTATATGTTAGTATTCC
AGCTATTATTCTAGCGTATCTTTATGCGAATAAATTTACAGTTGCCGGAATGGGTGAAGATTTTGCGAGAAATCTTGGTT
TAAGCTATAAGCTAGTACTAAATATTGGTCTGGTCCTTGTTGCGGTTATATCGACAACGGTTGTCCTTACTGTCGGGGTA
ATTCCATTTCTAGGGCTCATAGTTCCCAATATTGTCTCCTTATATTTAGGTGACAACCTGCGCAAAACAATTCCGCATAC
AGCGGTGTTAGGGATTGTCTTCTTATTAATATGTGACATTCTAGGGCGCATCATCATTCATCCTTATGAAATTCCAGTTA
ATGTAACAGTGGCAGTGATAGGCAGTGCAATCTTCTTAACGATGCTGCTTAGGGGGAGAGCATATGCGAAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A160M628

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

56.146

94.953

0.533

Multiple sequence alignment