Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   A361_RS00595 Genome accession   NZ_CP015506
Coordinates   113967..115346 (+) Length   459 a.a.
NCBI ID   WP_009336516.1    Uniprot ID   A0A160M5V3
Organism   Cytobacillus oceanisediminis 2691     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 108967..120346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A361_RS00575 (A361_00575) - 109083..109544 (+) 462 WP_009336509.1 CtsR family transcriptional regulator -
  A361_RS00580 (A361_00580) - 109568..110116 (+) 549 WP_009336510.1 UvrB/UvrC motif-containing protein -
  A361_RS00585 (A361_00585) - 110119..111198 (+) 1080 WP_009336512.1 protein arginine kinase -
  A361_RS00590 (A361_00590) clpC 111203..113653 (+) 2451 WP_009336514.1 ATP-dependent protease ATP-binding subunit ClpC -
  A361_RS00595 (A361_00595) radA 113967..115346 (+) 1380 WP_009336516.1 DNA repair protein RadA Machinery gene
  A361_RS00600 (A361_00600) disA 115349..116422 (+) 1074 WP_009336517.1 DNA integrity scanning diadenylate cyclase DisA -
  A361_RS00605 (A361_00605) - 116650..117738 (+) 1089 WP_019382775.1 PIN/TRAM domain-containing protein -
  A361_RS00610 (A361_00610) ispD 117824..118510 (+) 687 WP_019382776.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  A361_RS00615 (A361_00615) ispF 118524..119009 (+) 486 WP_009336523.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49522.92 Da        Isoelectric Point: 7.1763

>NTDB_id=180139 A361_RS00595 WP_009336516.1 113967..115346(+) (radA) [Cytobacillus oceanisediminis 2691]
MAKRKTKFMCQECGYESPKWMGKCPGCGQWNTMVEEVEKPASTRRGAFAHSQGSAIAAKATPITSIETVSEPRIHTDLIE
LNRVLGGGIVRGSLVLIGGDPGIGKSTLLLQVSSQLANRKHSVLYISGEESMRQTKLRADRLGVSSDNLLVYSETSLDEI
SRTIDSVSPDFVIIDSIQTIFHPEVTSAPGSVSQVRECTAELMRIGKTKGIAIFIVGHVTKEGSIAGPRLLEHMVDTVLY
FEGERHHTYRILRAVKNRFGSTNEMGIFEMKEFGLEEVANPSEIFLEERSQGAAGSTVVASMEGTRPVLVEIQALISPTS
FGNPRRMATGIDHNRVPLLMAVLEKRVGMLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFRDKPTKATDCIIGEVGL
TGEVRRVSRIEQRVQEAAKLGFERVILPANNLGGWSAPGGIELIGVSSVGEALKAALGG

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=180139 A361_RS00595 WP_009336516.1 113967..115346(+) (radA) [Cytobacillus oceanisediminis 2691]
ATGGCTAAAAGAAAAACGAAATTCATGTGCCAGGAATGCGGCTATGAATCACCGAAGTGGATGGGGAAATGTCCGGGATG
CGGACAGTGGAATACGATGGTGGAAGAGGTGGAGAAGCCTGCTTCAACGAGAAGGGGCGCTTTTGCTCATTCACAGGGCT
CTGCCATAGCGGCGAAAGCTACACCGATTACATCCATTGAAACAGTCAGCGAACCACGCATACATACCGATTTAATAGAA
TTAAACCGTGTCCTTGGGGGAGGAATCGTTAGAGGTTCCCTTGTTCTTATTGGGGGAGATCCGGGCATCGGGAAATCAAC
GCTTCTTCTTCAAGTGTCATCACAGCTGGCGAACAGGAAGCATTCTGTTCTTTATATATCAGGGGAAGAATCCATGCGTC
AGACGAAGCTGCGTGCTGACCGCTTAGGTGTTTCTTCAGACAATCTGCTTGTTTACTCGGAAACCAGCCTTGATGAAATC
AGCAGAACAATTGATTCAGTGAGTCCTGACTTTGTCATTATAGACTCCATTCAGACGATCTTTCATCCTGAAGTGACATC
AGCGCCTGGCAGCGTTTCTCAGGTCCGGGAATGTACCGCTGAGCTAATGCGCATCGGCAAAACGAAGGGAATTGCCATTT
TTATCGTAGGGCATGTTACAAAGGAAGGGTCCATTGCCGGTCCAAGACTTCTGGAGCATATGGTTGATACGGTTTTGTAC
TTTGAGGGTGAACGCCATCATACATACCGGATCCTGCGGGCAGTGAAAAACAGATTTGGCTCAACAAACGAGATGGGCAT
TTTTGAAATGAAGGAATTTGGGCTTGAGGAAGTGGCTAACCCGTCAGAAATTTTCCTGGAAGAGCGGTCACAGGGAGCTG
CCGGTTCAACAGTAGTTGCTTCTATGGAAGGAACGAGGCCAGTCCTGGTTGAAATTCAGGCGCTGATTTCTCCAACAAGC
TTTGGAAATCCAAGACGAATGGCGACAGGAATTGATCATAACCGGGTTCCGCTCCTGATGGCGGTTTTGGAAAAACGGGT
CGGGATGCTCCTGCAAAATCAGGATGCATACTTAAAAGTGGCTGGCGGAGTGAAGCTTGATGAACCGGCTATTGATCTGG
CCATTGCTGTGAGTATTGCGTCAAGCTTTCGGGATAAGCCAACAAAGGCAACAGACTGCATCATCGGAGAAGTAGGACTC
ACAGGAGAGGTCAGGAGAGTATCAAGAATAGAACAAAGAGTGCAGGAGGCAGCCAAGCTGGGTTTTGAGCGGGTTATCCT
GCCGGCGAACAATCTTGGCGGCTGGAGCGCACCGGGAGGAATTGAACTAATCGGAGTAAGTTCGGTCGGTGAAGCTCTTA
AGGCTGCGTTAGGGGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(365-431)

AAA domain (AAA_25)

(73-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A160M5V3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

76.957

100

0.771
  radA Streptococcus pneumoniae Rx1

60.349

100

0.603
  radA Streptococcus pneumoniae D39

60.349

100

0.603
  radA Streptococcus pneumoniae R6

60.349

100

0.603
  radA Streptococcus pneumoniae TIGR4

60.349

100

0.603
  radA Streptococcus mitis NCTC 12261

60.349

100

0.603
  radA Streptococcus mitis SK321

60.349

100

0.603

Multiple sequence alignment