Detailed information NTG0180102

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BWR11_RS07195
• Genome accession: NZ_CP019338
• Coordinates: 1498511..1499515 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain L10
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1493511..1504515

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BWR11_RS07165 (BWR11_07180)	fghA	1493603..1494454 (+)	852	WP_003138034.1	S-formylglutathione hydrolase	-
BWR11_RS07170 (BWR11_07185)	ispF	1494525..1494998 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BWR11_RS07175 (BWR11_07190)	truD	1494995..1496062 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
BWR11_RS07180 (BWR11_07195)	surE	1496050..1496799 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
BWR11_RS07185 (BWR11_07200)	-	1496832..1497467 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BWR11_RS07190 (BWR11_07205)	-	1497513..1498406 (+)	894	WP_003138035.1	peptidoglycan DD-metalloendopeptidase family protein	-
BWR11_RS07195 (BWR11_07210)	rpoS	1498511..1499515 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
BWR11_RS07200 (BWR11_07215)	fdxA	1499941..1500264 (-)	324	WP_003092272.1	ferredoxin FdxA	-
BWR11_RS07205 (BWR11_07220)	mutS	1500331..1502898 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
BWR11_RS07215 (BWR11_07230)	-	1503024..1504031 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=180102 BWR11_RS07195 WP_003113871.1 1498511..1499515(+) (rpoS) [Pseudomonas aeruginosa strain L10]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=180102 BWR11_RS07195 WP_003113871.1 1498511..1499515(+) (rpoS) [Pseudomonas aeruginosa strain L10]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653