Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   A4W74_RS10340 Genome accession   NZ_CP015494
Coordinates   223354..224061 (-) Length   235 a.a.
NCBI ID   WP_081038321.1    Uniprot ID   A0AAJ0PCE4
Organism   Latilactobacillus curvatus strain TMW 1.1390     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 218354..229061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W74_RS01140 (A4W74_01130) rpoC 219640..223281 (+) 3642 WP_004270200.1 DNA-directed RNA polymerase subunit beta' -
  A4W74_RS10340 comC 223354..224061 (-) 708 WP_081038321.1 A24 family peptidase Machinery gene
  A4W74_RS01150 (A4W74_01140) rpsL 224332..224745 (+) 414 WP_004270179.1 30S ribosomal protein S12 -
  A4W74_RS01155 (A4W74_01145) rpsG 224835..225305 (+) 471 WP_054644265.1 30S ribosomal protein S7 -
  A4W74_RS01160 (A4W74_01150) fusA 225397..227484 (+) 2088 WP_004270213.1 elongation factor G -
  A4W74_RS01165 (A4W74_01155) rsgA 228129..228893 (-) 765 WP_081303822.1 ribosome small subunit-dependent GTPase A -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26544.85 Da        Isoelectric Point: 6.9137

>NTDB_id=180073 A4W74_RS10340 WP_081038321.1 223354..224061(-) (comC) [Latilactobacillus curvatus strain TMW 1.1390]
MTRLLIYFLTFVIGACCASFLTVCAWRWPLGLSITWPGSRCDFCHHALAWYDLCPIISYLILRGHCRYCDTRIQHHFFTS
EVIGGLLACCLASQYFTPQIGYLLLILYLLSLVDIFHTALYPVPMVLAFMPLFIDYWPTNHWLSALLIGSTLSVINYFSD
GIGTGDIELLAILGLWFGLEVTLSMLLIACLLCLIKYLIDSLHHPVVLALVGRRPIPFVPYISYGVLIVLFIANT

Nucleotide


Download         Length: 708 bp        

>NTDB_id=180073 A4W74_RS10340 WP_081038321.1 223354..224061(-) (comC) [Latilactobacillus curvatus strain TMW 1.1390]
ATGACACGTTTGTTAATATATTTTTTAACCTTTGTTATTGGCGCGTGTTGCGCCTCTTTTTTAACTGTTTGTGCTTGGCG
TTGGCCACTCGGTTTATCCATCACATGGCCTGGTTCACGGTGTGACTTCTGCCATCACGCCCTCGCTTGGTACGACTTAT
GTCCAATTATCAGTTACCTCATTCTCAGAGGGCACTGCCGCTATTGTGATACTCGAATCCAGCACCATTTTTTTACTAGT
GAGGTTATTGGCGGCTTGTTAGCGTGTTGTTTAGCCAGTCAATATTTCACACCACAGATTGGCTATTTATTGCTTATCCT
TTATTTGTTGAGCCTAGTCGATATTTTCCATACAGCTCTATACCCAGTTCCAATGGTACTGGCTTTTATGCCTTTGTTTA
TTGACTACTGGCCGACAAACCATTGGCTCAGTGCCCTATTGATTGGCAGCACCTTATCTGTCATCAACTACTTTTCAGAT
GGCATCGGTACTGGTGACATTGAATTATTGGCAATTCTTGGGTTGTGGTTTGGATTGGAGGTCACCCTATCCATGTTATT
AATTGCCTGTCTCCTCTGTTTAATCAAATATCTCATTGATAGTCTCCACCATCCAGTTGTCCTCGCCTTAGTCGGACGCC
GCCCAATTCCATTTGTCCCGTATATCAGCTACGGTGTCTTAATCGTTTTGTTTATTGCAAACACATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(12-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Latilactobacillus sakei subsp. sakei 23K

50.661

96.596

0.489

Multiple sequence alignment