Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   A4W82_RS05575 Genome accession   NZ_CP015487
Coordinates   1078766..1079632 (-) Length   288 a.a.
NCBI ID   WP_025015773.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.46     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1073766..1084632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W82_RS05560 (A4W82_05485) topA 1075003..1077086 (-) 2084 Protein_1064 type I DNA topoisomerase -
  A4W82_RS05565 (A4W82_05490) - 1077336..1077770 (-) 435 WP_011374692.1 Rrf2 family transcriptional regulator -
  A4W82_RS05570 (A4W82_05495) - 1077799..1078665 (-) 867 WP_056936410.1 NAD(P)H-binding protein -
  A4W82_RS05575 (A4W82_05500) dprA 1078766..1079632 (-) 867 WP_025015773.1 DNA-processing protein DprA Machinery gene
  A4W82_RS05580 (A4W82_05505) - 1079687..1080448 (-) 762 WP_025015772.1 ribonuclease HII -
  A4W82_RS05585 (A4W82_05510) ylqF 1080450..1081301 (-) 852 WP_198929255.1 ribosome biogenesis GTPase YlqF -
  A4W82_RS05590 (A4W82_05515) lepB 1081433..1081963 (-) 531 WP_076647574.1 signal peptidase I -
  A4W82_RS05595 (A4W82_05520) - 1081988..1082212 (-) 225 WP_016265150.1 YozE family protein -
  A4W82_RS05600 (A4W82_05525) - 1082223..1082852 (-) 630 WP_011374699.1 YpmS family protein -
  A4W82_RS05605 (A4W82_05530) - 1082865..1083767 (-) 903 WP_251925489.1 SGNH/GDSL hydrolase family protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31845.84 Da        Isoelectric Point: 8.8338

>NTDB_id=179985 A4W82_RS05575 WP_025015773.1 1078766..1079632(-) (dprA) [Latilactobacillus sakei strain TMW 1.46]
MLTKNQLLLKVHLAAGFGPISELRLAAWLATSHNWALSALEIAQITRLPERYWPTFQASFQSTTLQRQCIEHEVRTTYLT
ILDKDYPQRLLETYLPPVLLFYRGDLRLLKQPCLAVVGARQATHYSKQSLEQLLQGLTATTIISGLAQGADAMAHEVALQ
RGLAPIGVIGTGINCSYPPQNEHLQQVVAEKGLLLSEYALGTPARRYQFPARNKIIAGLCHSLIVTEARHKSGSLITANL
ALQANRNVYAIPGRIDQSLSQGCNQLIAAGATPLLDKNILIEELRYFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=179985 A4W82_RS05575 WP_025015773.1 1078766..1079632(-) (dprA) [Latilactobacillus sakei strain TMW 1.46]
GTGTTAACTAAAAATCAATTACTCTTAAAAGTACATTTAGCGGCGGGTTTTGGGCCTATTAGTGAATTACGCTTGGCGGC
GTGGCTAGCAACCAGTCATAATTGGGCGTTATCGGCGTTAGAAATTGCGCAGATTACGCGCTTGCCGGAACGTTATTGGC
CGACTTTTCAAGCAAGTTTTCAAAGTACAACCTTACAACGCCAATGCATCGAACATGAAGTTCGAACGACTTATTTAACC
ATCTTAGATAAAGATTACCCACAACGCTTATTGGAAACCTATTTGCCGCCCGTTTTGTTATTTTATCGTGGTGATTTAAG
ATTGTTAAAACAGCCATGTCTCGCGGTAGTCGGGGCGCGTCAAGCGACTCATTATTCTAAACAATCACTAGAACAGTTAT
TACAAGGACTAACTGCCACTACGATTATTAGTGGGTTAGCACAAGGAGCGGATGCGATGGCCCACGAAGTTGCCTTGCAG
CGTGGTTTGGCCCCAATTGGGGTGATTGGCACGGGCATTAATTGCAGTTATCCACCACAAAATGAGCATTTACAACAGGT
AGTTGCTGAAAAAGGTTTGTTATTATCTGAATACGCTCTTGGTACACCAGCCCGGCGCTATCAATTTCCAGCCCGTAATA
AAATCATCGCGGGGTTATGTCATAGTTTAATTGTGACGGAAGCACGGCACAAGAGTGGTAGCTTGATTACCGCTAACTTG
GCCCTTCAAGCTAATCGCAATGTCTATGCAATTCCGGGGCGCATTGATCAATCACTGTCACAGGGGTGCAACCAATTAAT
CGCCGCGGGAGCGACACCATTGTTAGATAAAAACATATTAATAGAAGAACTACGTTATTTTGATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Latilactobacillus sakei subsp. sakei 23K

98.611

100

0.986

Multiple sequence alignment