Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   A6V38_RS11480 Genome accession   NZ_CP015447
Coordinates   2171030..2171746 (+) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   A0A7U7IEW1
Organism   Staphylococcus aureus strain M92     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2166030..2176746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6V38_RS11450 (A6V38_11445) - 2166249..2166875 (+) 627 WP_000522384.1 nitroreductase family protein -
  A6V38_RS11455 (A6V38_11455) - 2167236..2168021 (+) 786 WP_000867960.1 carbon-nitrogen family hydrolase -
  A6V38_RS16370 hld 2168618..2168698 (-) 81 WP_000046022.1 delta-hemolysin -
  A6V38_RS11465 (A6V38_11465) agrB 2168988..2169557 (+) 570 WP_001105707.1 accessory gene regulator AgrB -
  A6V38_RS11470 (A6V38_11470) agrD 2169554..2169694 (+) 141 WP_001093929.1 cyclic lactone autoinducer peptide AgrD -
  A6V38_RS11475 (A6V38_11475) agrC 2169719..2171011 (+) 1293 WP_001554031.1 quorum-sensing sensor histidine kinase AgrC -
  A6V38_RS11480 (A6V38_11480) agrA 2171030..2171746 (+) 717 WP_000688492.1 quorum-sensing response regulator AgrA Regulator
  A6V38_RS11485 (A6V38_11485) - 2171818..2171925 (+) 108 WP_001790167.1 hypothetical protein -
  A6V38_RS11490 (A6V38_11490) - 2172113..2173072 (-) 960 WP_001253313.1 carbohydrate kinase -
  A6V38_RS11495 (A6V38_11495) - 2173069..2174553 (-) 1485 WP_000141417.1 sucrose-6-phosphate hydrolase -
  A6V38_RS11500 (A6V38_11500) - 2174702..2175652 (-) 951 WP_000790330.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=179942 A6V38_RS11480 WP_000688492.1 2171030..2171746(+) (agrA) [Staphylococcus aureus strain M92]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=179942 A6V38_RS11480 WP_000688492.1 2171030..2171746(+) (agrA) [Staphylococcus aureus strain M92]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCTGAATTAAGAACTCGAATTATAGACTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IEW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1

Multiple sequence alignment