Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BWQ98_RS05930 Genome accession   NZ_CP019299
Coordinates   1119491..1121158 (-) Length   555 a.a.
NCBI ID   WP_000923596.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain HKU1-14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1114491..1126158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWQ98_RS05900 (BWQ98_05910) - 1114728..1115532 (-) 805 Protein_1117 IS5 family transposase -
  BWQ98_RS05905 (BWQ98_05915) - 1115540..1115842 (-) 303 WP_000590559.1 PTS sugar transporter subunit IIB -
  BWQ98_RS05910 (BWQ98_05920) - 1115880..1116356 (-) 477 Protein_1119 PTS sugar transporter subunit IIA -
  BWQ98_RS11510 - 1116536..1116778 (+) 243 WP_000693249.1 hypothetical protein -
  BWQ98_RS05920 (BWQ98_05930) lepA 1116859..1118682 (-) 1824 WP_001047212.1 translation elongation factor 4 -
  BWQ98_RS05925 (BWQ98_05935) - 1118761..1119489 (-) 729 WP_000133339.1 metallophosphoesterase family protein -
  BWQ98_RS05930 (BWQ98_05940) recN 1119491..1121158 (-) 1668 WP_000923596.1 DNA repair protein RecN Machinery gene
  BWQ98_RS05935 (BWQ98_05945) - 1121165..1121596 (-) 432 WP_001034415.1 arginine repressor -
  BWQ98_RS05940 (BWQ98_05950) - 1121589..1122404 (-) 816 WP_001041073.1 TlyA family RNA methyltransferase -
  BWQ98_RS05945 (BWQ98_05955) - 1122397..1123272 (-) 876 WP_000743808.1 polyprenyl synthetase family protein -
  BWQ98_RS05950 (BWQ98_05960) - 1123269..1123481 (-) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  BWQ98_RS05955 (BWQ98_05965) xseA 1123459..1124799 (-) 1341 WP_050212880.1 exodeoxyribonuclease VII large subunit -
  BWQ98_RS05960 (BWQ98_05970) udk 1124927..1125565 (-) 639 WP_001181378.1 uridine kinase -
  BWQ98_RS05970 (BWQ98_05980) - 1125673..1125948 (-) 276 WP_000436713.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62865.32 Da        Isoelectric Point: 4.6798

>NTDB_id=179928 BWQ98_RS05930 WP_000923596.1 1119491..1121158(-) (recN) [Streptococcus pneumoniae strain HKU1-14]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRTIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLDLNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNKMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=179928 BWQ98_RS05930 WP_000923596.1 1119491..1121158(-) (recN) [Streptococcus pneumoniae strain HKU1-14]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCTATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAACTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGATCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCCATGAATGACATGGAAAGTGTCGAAGAGTATGACCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTCATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATAAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGCATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACGGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44

Multiple sequence alignment