Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   A1D33_RS16510 Genome accession   NZ_CP015443
Coordinates   3481914..3482681 (+) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus velezensis strain CC09     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3476914..3487681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1D33_RS16485 (A1D33_016480) - 3477197..3479329 (+) 2133 WP_007408284.1 HD family phosphohydrolase -
  A1D33_RS16490 (A1D33_016485) ybeY 3479330..3479803 (+) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  A1D33_RS16495 (A1D33_016490) - 3479784..3480158 (+) 375 WP_003152974.1 diacylglycerol kinase family protein -
  A1D33_RS16500 (A1D33_016495) - 3480282..3480692 (+) 411 WP_003152976.1 cytidine deaminase -
  A1D33_RS16505 (A1D33_016500) era 3480673..3481578 (+) 906 WP_007408285.1 GTPase Era -
  A1D33_RS20170 - 3481734..3481877 (+) 144 WP_007408286.1 YqzL family protein -
  A1D33_RS16510 (A1D33_016505) recO 3481914..3482681 (+) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  A1D33_RS16515 (A1D33_016510) glyQ 3482983..3483870 (+) 888 WP_040237913.1 glycine--tRNA ligase subunit alpha -
  A1D33_RS16520 (A1D33_016515) glyS 3483863..3485902 (+) 2040 WP_015417840.1 glycine--tRNA ligase subunit beta -
  A1D33_RS16525 (A1D33_016520) ccpN 3486003..3486641 (+) 639 WP_003152989.1 transcriptional regulator CcpN -
  A1D33_RS16530 (A1D33_016525) - 3486667..3487479 (+) 813 WP_015417839.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=179877 A1D33_RS16510 WP_007408287.1 3481914..3482681(+) (recO) [Bacillus velezensis strain CC09]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=179877 A1D33_RS16510 WP_007408287.1 3481914..3482681(+) (recO) [Bacillus velezensis strain CC09]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCAGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATATGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAATGAAATTAAACGGGTCATTGATCTGTATTACGAAGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89

Multiple sequence alignment