Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   A1D33_RS15685 Genome accession   NZ_CP015443
Coordinates   3325914..3326666 (+) Length   250 a.a.
NCBI ID   WP_015417928.1    Uniprot ID   -
Organism   Bacillus velezensis strain CC09     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3320914..3331666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1D33_RS15670 (A1D33_015670) - 3321137..3321328 (-) 192 WP_003152639.1 hypothetical protein -
  A1D33_RS15675 (A1D33_015675) - 3321781..3324423 (+) 2643 WP_015417930.1 valine--tRNA ligase -
  A1D33_RS15680 (A1D33_015680) - 3324482..3325774 (+) 1293 WP_015417929.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  A1D33_RS15685 (A1D33_015685) comC 3325914..3326666 (+) 753 WP_015417928.1 prepilin peptidase Machinery gene
  A1D33_RS15690 (A1D33_015690) - 3326793..3327794 (+) 1002 WP_015417927.1 SPOR domain-containing protein -
  A1D33_RS15695 (A1D33_015695) - 3327935..3328504 (+) 570 WP_015417926.1 Maf family protein -
  A1D33_RS15700 (A1D33_015700) radC 3328536..3329231 (+) 696 WP_032866595.1 RadC family protein -
  A1D33_RS15705 (A1D33_015705) mreB 3329323..3330336 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  A1D33_RS15710 (A1D33_015710) mreC 3330367..3331230 (+) 864 WP_007408166.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27247.99 Da        Isoelectric Point: 9.4293

>NTDB_id=179870 A1D33_RS15685 WP_015417928.1 3325914..3326666(+) (comC) [Bacillus velezensis strain CC09]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISVGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=179870 A1D33_RS15685 WP_015417928.1 3325914..3326666(+) (comC) [Bacillus velezensis strain CC09]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGTCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTCTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGTCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58

Multiple sequence alignment