Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   A1D33_RS08975 Genome accession   NZ_CP015443
Coordinates   1973223..1973513 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain CC09     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1968223..1978513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1D33_RS08960 (A1D33_008965) - 1968445..1969770 (-) 1326 WP_023356663.1 G5 and 3D domain-containing protein -
  A1D33_RS08965 (A1D33_008970) - 1969905..1970672 (-) 768 WP_017419495.1 TatD family hydrolase -
  A1D33_RS08970 (A1D33_008975) metG 1970749..1972740 (-) 1992 WP_011996169.1 methionine--tRNA ligase -
  A1D33_RS08975 (A1D33_008980) abrB 1973223..1973513 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  A1D33_RS08980 (A1D33_008985) rsmI 1973563..1974444 (-) 882 WP_040238641.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  A1D33_RS08985 (A1D33_008990) - 1974419..1974718 (-) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  A1D33_RS08990 (A1D33_008995) - 1974705..1975448 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  A1D33_RS08995 (A1D33_009000) yabA 1975509..1975868 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  A1D33_RS09000 (A1D33_009005) ricT 1975883..1976710 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  A1D33_RS09005 (A1D33_009010) holB 1976713..1977702 (-) 990 WP_033575250.1 DNA polymerase III subunit delta' -
  A1D33_RS09010 (A1D33_009015) - 1977714..1978154 (-) 441 WP_004264730.1 YaaR family protein -
  A1D33_RS09015 (A1D33_009020) darA 1978167..1978496 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=179845 A1D33_RS08975 WP_169510469.1 1973223..1973513(+) (abrB) [Bacillus velezensis strain CC09]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=179845 A1D33_RS08975 WP_169510469.1 1973223..1973513(+) (abrB) [Bacillus velezensis strain CC09]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCAATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAGGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment