Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   A1D33_RS02270 Genome accession   NZ_CP015443
Coordinates   617849..618457 (-) Length   202 a.a.
NCBI ID   WP_060675396.1    Uniprot ID   -
Organism   Bacillus velezensis strain CC09     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 612849..623457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1D33_RS02245 (A1D33_002245) mobB 613225..613746 (-) 522 WP_039063003.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  A1D33_RS02250 (A1D33_002250) glp 613707..614999 (-) 1293 WP_015417375.1 gephyrin-like molybdotransferase Glp -
  A1D33_RS02255 (A1D33_002255) - 615017..616036 (-) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  A1D33_RS02260 (A1D33_002260) - 616088..616690 (-) 603 WP_039251605.1 molybdenum cofactor guanylyltransferase -
  A1D33_RS02265 (A1D33_002265) - 616836..617828 (+) 993 WP_060675397.1 hypothetical protein -
  A1D33_RS02270 (A1D33_002270) rok 617849..618457 (-) 609 WP_060675396.1 transcriptional regulator Rok Regulator
  A1D33_RS02275 (A1D33_002275) - 618909..619367 (-) 459 WP_015417374.1 redoxin domain-containing protein -
  A1D33_RS02280 (A1D33_002280) - 619656..620462 (+) 807 WP_015417373.1 mechanosensitive ion channel family protein -
  A1D33_RS02285 (A1D33_002285) - 620496..620741 (-) 246 WP_003154596.1 YkuS family protein -
  A1D33_RS02290 (A1D33_002290) - 620802..621926 (-) 1125 WP_012117444.1 N-acetyldiaminopimelate deacetylase -
  A1D33_RS02295 (A1D33_002295) dapD 621997..622707 (-) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  A1D33_RS02300 (A1D33_002300) - 622789..623244 (-) 456 WP_033574618.1 flavodoxin -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22896.92 Da        Isoelectric Point: 9.4832

>NTDB_id=179818 A1D33_RS02270 WP_060675396.1 617849..618457(-) (rok) [Bacillus velezensis strain CC09]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
AQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTANDTAAE

Nucleotide


Download         Length: 609 bp        

>NTDB_id=179818 A1D33_RS02270 WP_060675396.1 617849..618457(-) (rok) [Bacillus velezensis strain CC09]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
GCACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCTGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATTAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

96.04

0.827

Multiple sequence alignment