Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   GFC30_RS13845 Genome accession   NZ_CP015438
Coordinates   2691648..2694005 (-) Length   785 a.a.
NCBI ID   WP_066326418.1    Uniprot ID   A0A160F6J1
Organism   Anoxybacteroides amylolyticum strain DSM 15939     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2686648..2699005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFC30_RS13825 (GFC30_2830) - 2686714..2688060 (+) 1347 WP_084256380.1 N-acetylmuramoyl-L-alanine amidase -
  GFC30_RS13830 (GFC30_2831) dtd 2688343..2688795 (-) 453 WP_066326414.1 D-aminoacyl-tRNA deacylase -
  GFC30_RS13835 (GFC30_2832) - 2688808..2690994 (-) 2187 WP_066326415.1 RelA/SpoT family protein -
  GFC30_RS13840 (GFC30_2833) - 2691145..2691657 (-) 513 WP_066326417.1 adenine phosphoribosyltransferase -
  GFC30_RS13845 (GFC30_2834) recJ 2691648..2694005 (-) 2358 WP_066326418.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  GFC30_RS13850 (GFC30_2835) - 2694062..2694964 (-) 903 WP_066326419.1 cation diffusion facilitator family transporter -
  GFC30_RS13855 (GFC30_2836) secDF 2695236..2697488 (-) 2253 WP_066326420.1 protein translocase subunit SecDF -
  GFC30_RS13860 (GFC30_2837) - 2697641..2697931 (-) 291 WP_066326422.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88103.50 Da        Isoelectric Point: 5.8968

>NTDB_id=179787 GFC30_RS13845 WP_066326418.1 2691648..2694005(-) (recJ) [Anoxybacteroides amylolyticum strain DSM 15939]
MLTAKTRWDVKRPSLDKVNQLVERLNIAPLVASLLINRGIETAEAAKAFLMPEKQPLHDPFLFDSMEQAVERIRRAIQAR
ERILVFGDYDADGVSSTTVMMSALNELGANADFYIPNRFTEGYGPNEPAFRLAKAQGVSLIITVDTGIAAVKEIALANEL
GMDVIITDHHEPGPVLPEALAIIHPKIGRYPFRELAGVGVAFKLAHALLGDVPEHLLDVVAIGTIADLVSLTGENRSLVV
RGLEQLRNTARIGLRTLLKQCGVNLAQVNEETVGFVIAPRINAVGRLGDAAPAVKLLMTDDEAEAQQLAAEMDVLNRERQ
KLVSDITEEAVAIIERTFPLDANRVLVVAKEGWNAGVVGIVASKLVERFYRPTIVLSIDREKGIAKGSGRSIHGFDLFHH
LSACRDILPHFGGHPMAAGMTLAIEHVDELRERLNRQAWETLTEEDFLPVTSIDAVCSVRDVTLEAVEQLEQLAPFGADN
PKPFVLLEEVAVQTIRRIGTNQAHIKMLFEHEGHTLDSVGFGYGYLHDEIASDAKVSVVGTLSVNEWNYLRKPQLMICDV
AVREWQLFDWRGIKQVQSALAALPLDKRLLVAFRPETIGILQLEAYRDEVHIIISEEEANRICADGRYLVLLDLPPKVDV
LKVLLHGSLPARIYALFYQRENHFFSTLPTRDHFKWLYSFLRQKRSFDVEKYGAELARSRGWTNETVHFMVQVFLELQFV
TLKHGVVQLVEQPAKRDLMDSPTYRLKQAQLELEKMFVYSSYEQLKRTFSEMRGSQLYEEAKTWI

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=179787 GFC30_RS13845 WP_066326418.1 2691648..2694005(-) (recJ) [Anoxybacteroides amylolyticum strain DSM 15939]
ATGTTAACAGCAAAAACACGTTGGGATGTCAAACGTCCTAGTCTAGATAAAGTCAATCAGCTTGTCGAGCGATTAAATAT
CGCTCCGCTTGTCGCGTCATTGCTTATCAATCGCGGCATCGAAACAGCGGAAGCAGCAAAGGCGTTTTTAATGCCGGAAA
AGCAGCCGCTTCATGACCCGTTTTTATTTGACAGCATGGAACAAGCGGTCGAACGAATTCGTCGAGCGATTCAAGCAAGA
GAACGTATTCTTGTCTTTGGCGATTACGATGCTGACGGCGTTAGCAGCACGACCGTTATGATGAGCGCACTAAACGAATT
AGGAGCGAACGCTGACTTTTATATTCCTAACCGCTTTACTGAAGGATACGGACCGAACGAGCCAGCGTTTCGCCTAGCAA
AAGCGCAAGGTGTTTCGCTTATTATCACGGTTGACACAGGAATTGCTGCGGTAAAAGAGATAGCACTGGCGAATGAACTT
GGAATGGATGTCATCATTACTGACCATCACGAACCGGGACCAGTGTTGCCAGAGGCGCTCGCCATCATTCATCCGAAAAT
AGGGCGGTATCCGTTTCGTGAACTGGCTGGGGTTGGGGTGGCATTTAAGCTAGCTCACGCGTTGCTTGGAGACGTGCCAG
AGCATTTGCTAGACGTCGTGGCGATTGGAACAATTGCCGATCTTGTGTCGTTAACAGGCGAAAATCGTTCGCTCGTCGTC
CGCGGCTTAGAACAATTGCGAAACACTGCGCGTATTGGGTTACGAACGTTACTTAAACAATGCGGAGTGAATCTTGCGCA
GGTGAACGAAGAAACCGTTGGCTTTGTCATCGCTCCACGCATTAATGCGGTCGGACGGTTAGGCGATGCCGCTCCGGCAG
TGAAGTTATTAATGACCGACGACGAAGCAGAAGCGCAGCAGTTAGCGGCAGAGATGGACGTGCTTAACCGCGAACGGCAA
AAGCTCGTCAGCGACATCACCGAAGAAGCGGTAGCGATAATTGAACGAACGTTTCCACTAGACGCGAACCGTGTGCTTGT
CGTCGCAAAAGAGGGATGGAACGCAGGTGTGGTTGGCATTGTTGCTTCAAAGCTAGTGGAACGGTTTTATCGTCCCACGA
TTGTGTTAAGCATTGACCGTGAAAAAGGAATAGCGAAAGGCTCAGGGCGCAGCATTCACGGTTTTGATCTTTTTCATCAT
CTATCGGCATGCCGCGACATTTTGCCGCATTTTGGGGGGCATCCGATGGCAGCTGGCATGACGCTTGCGATAGAGCATGT
GGACGAGCTAAGAGAGCGGCTAAATCGGCAGGCATGGGAAACGTTAACAGAGGAGGATTTCTTGCCGGTTACATCGATTG
ATGCCGTCTGTTCTGTCCGAGACGTCACGTTAGAAGCGGTAGAACAACTAGAGCAACTCGCTCCGTTTGGCGCTGATAAT
CCAAAACCGTTTGTGTTGCTAGAAGAAGTGGCAGTGCAAACGATTCGCCGTATCGGGACGAACCAAGCTCATATTAAAAT
GTTGTTTGAACATGAAGGGCATACGCTTGACAGTGTTGGTTTCGGCTATGGCTATTTGCACGACGAAATCGCTTCTGATG
CGAAAGTGTCCGTCGTTGGCACGTTATCTGTGAACGAGTGGAACTATTTACGTAAACCACAGCTTATGATTTGCGACGTT
GCCGTACGAGAGTGGCAGTTGTTTGATTGGCGGGGAATCAAGCAAGTGCAGTCCGCTTTGGCGGCGCTTCCGCTTGATAA
GCGGTTGCTGGTGGCATTTCGTCCAGAAACGATAGGGATATTGCAACTCGAAGCATATCGTGACGAAGTGCATATTATCA
TCTCGGAGGAAGAAGCAAATCGCATTTGCGCGGACGGCCGCTACCTTGTCCTTCTTGATTTGCCACCGAAGGTTGATGTA
TTAAAAGTTTTACTACATGGTAGTTTACCTGCGCGCATTTATGCGTTATTCTATCAAAGGGAGAATCATTTTTTTAGCAC
GCTACCAACGCGTGACCATTTTAAATGGTTATATTCGTTTTTGCGTCAGAAACGATCATTTGATGTGGAAAAATACGGCG
CTGAATTGGCACGTTCGCGCGGATGGACGAATGAAACGGTTCATTTTATGGTACAAGTCTTTTTAGAGTTACAGTTTGTC
ACGCTAAAGCATGGTGTCGTTCAACTGGTAGAACAGCCAGCGAAGCGTGATTTAATGGATTCCCCAACCTACCGATTAAA
ACAAGCTCAACTAGAGCTCGAAAAAATGTTTGTTTATTCATCTTATGAACAATTAAAGCGCACCTTTTCTGAAATGAGAG
GTTCGCAACTGTACGAGGAGGCAAAAACATGGATTTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-768)

DHH family (DHH)

(82-224)

DHHA1 domain (DHHA1)

(315-436)

RecJ OB domain (RecJ_OB)

(453-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A160F6J1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.725

100

0.558

Multiple sequence alignment