Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   FORC53_RS14165 Genome accession   NZ_CP019290
Coordinates   2853414..2853881 (-) Length   155 a.a.
NCBI ID   WP_025787122.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_053     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2848414..2858881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC53_RS14125 (FORC53_2580) - 2848783..2849229 (-) 447 WP_031777617.1 hypothetical protein -
  FORC53_RS14130 (FORC53_2581) - 2849340..2850329 (-) 990 WP_039552617.1 GTPase family protein -
  FORC53_RS14135 (FORC53_2582) - 2850407..2850595 (+) 189 WP_051934082.1 helix-turn-helix transcriptional regulator -
  FORC53_RS14140 (FORC53_2583) - 2850612..2851580 (-) 969 WP_118893969.1 helix-turn-helix transcriptional regulator -
  FORC53_RS14145 (FORC53_2584) - 2851761..2852012 (-) 252 WP_004724214.1 hypothetical protein -
  FORC53_RS14150 (FORC53_2585) - 2852152..2852490 (+) 339 WP_017821281.1 YkvA family protein -
  FORC53_RS14155 (FORC53_2586) - 2852498..2852929 (-) 432 WP_118893970.1 DUF2787 family protein -
  FORC53_RS14160 (FORC53_2587) - 2852968..2853417 (-) 450 WP_118893971.1 DUF2787 family protein -
  FORC53_RS14165 (FORC53_2588) radC 2853414..2853881 (-) 468 WP_025787122.1 RadC family protein Machinery gene
  FORC53_RS14175 (FORC53_2590) - 2854199..2855302 (+) 1104 WP_000034199.1 AAA family ATPase -
  FORC53_RS14180 (FORC53_2591) - 2855299..2855970 (+) 672 WP_118893973.1 DUF4276 family protein -
  FORC53_RS14185 (FORC53_2592) cas6f 2857889..2858527 (-) 639 WP_039552596.1 type I-F CRISPR-associated endoribonuclease Cas6/Csy4 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17242.65 Da        Isoelectric Point: 6.2210

>NTDB_id=179784 FORC53_RS14165 WP_025787122.1 2853414..2853881(-) (radC) [Vibrio vulnificus strain FORC_053]
MRENNYYFDGPVTADRVLDAAAEILAARALRGDQYCNPEATKTYLSCKLKHHEREVFAVMFLDNQHRLIAFEELFFGTID
SASVYPREVLKAALKVNAAALIFAHNHPSGDATPSQADKQITQRLKEALALVDIRVLDHIVVGDSAISFAERGLL

Nucleotide


Download         Length: 468 bp        

>NTDB_id=179784 FORC53_RS14165 WP_025787122.1 2853414..2853881(-) (radC) [Vibrio vulnificus strain FORC_053]
ATGCGCGAAAATAACTACTATTTTGATGGTCCTGTTACGGCGGACAGGGTGCTCGACGCGGCCGCAGAAATCCTTGCTGC
ACGCGCCCTCCGAGGCGATCAATATTGCAATCCTGAAGCAACAAAAACCTATTTATCTTGCAAGTTAAAACACCATGAAA
GAGAGGTGTTTGCGGTGATGTTTCTAGATAATCAGCATCGCCTTATTGCCTTTGAAGAGCTGTTCTTTGGCACAATTGAT
TCGGCAAGTGTCTATCCCCGAGAAGTCCTCAAAGCGGCTTTAAAAGTCAATGCCGCCGCACTCATCTTTGCTCATAATCA
CCCTTCTGGCGATGCCACTCCTTCCCAAGCCGATAAACAAATTACGCAAAGGCTTAAAGAGGCTTTAGCGCTGGTGGACA
TTCGAGTTCTTGATCATATCGTGGTTGGCGATAGCGCCATCTCTTTTGCAGAAAGGGGGCTACTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(37-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.333

77.419

0.452