Detailed information NTG0179751

Bioinformatically predicted

Overview

• Name: comEC
• Type: Machinery gene
• Locus tag: FORC53_RS05020
• Genome accession: NZ_CP019290
• Coordinates: 1054148..1056397 (+)
• Length: 749 a.a.
• NCBI ID: WP_108694166.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain FORC_053
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1049148..1061397

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC53_RS04995 (FORC53_0928)	-	1049462..1050031 (-)	570	WP_198434274.1	PilZ domain-containing protein	-
FORC53_RS05000 (FORC53_0929)	lolC	1050297..1051502 (+)	1206	WP_011150839.1	lipoprotein-releasing ABC transporter permease subunit LolC	-
FORC53_RS05005 (FORC53_0930)	lolD	1051495..1052178 (+)	684	WP_011079967.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
FORC53_RS05010 (FORC53_0931)	lolE	1052190..1053434 (+)	1245	WP_011079968.1	lipoprotein-releasing ABC transporter permease subunit LolE	-
FORC53_RS05015 (FORC53_0932)	-	1053630..1054139 (-)	510	WP_011079969.1	DUF2062 domain-containing protein	-
FORC53_RS05020 (FORC53_0933)	comEC	1054148..1056397 (+)	2250	WP_108694166.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
FORC53_RS05025 (FORC53_0934)	msbA	1056430..1058181 (+)	1752	WP_043877274.1	lipid A ABC transporter ATP-binding protein/permease MsbA	-
FORC53_RS05030 (FORC53_0935)	lpxK	1058181..1059188 (+)	1008	WP_011150832.1	tetraacyldisaccharide 4'-kinase	-
FORC53_RS05035 (FORC53_0936)	-	1059169..1059348 (+)	180	WP_011079973.1	Trm112 family protein	-
FORC53_RS05040 (FORC53_0937)	kdsB	1059348..1060103 (+)	756	WP_011150831.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
FORC53_RS05045 (FORC53_0938)	-	1060275..1061063 (+)	789	WP_011079975.1	sensor domain-containing diguanylate cyclase	-

Sequence

Protein

• Length: 749 a.a.
• Molecular weight: 84038.13 Da
• Isoelectric Point: 8.3695

>NTDB_id=179751 FORC53_RS05020 WP_108694166.1 1054148..1056397(+) (comEC) [Vibrio vulnificus strain FORC_053]
MTLLGNNWLLASFSATLISASYWPLMPSWPWLMLIVVAIFIIIVRKTCRYLLGVTIALLIAISAGNLMQWQVKTLFQAGE
NITINGAVDSPFKQISHGYEGVVSITAINNSHLVWTLRPKVRLISPIPLGQGDQIVAHVTLKRVYGLLNEAGFDAERFAV
SQGIVGRATIDDSRSWRLVSVKGGRQALIEKAQQLLVRSDHTGYLLGLSFGLRDDITDEQWQQLKQSGLIHLLSISGLHI
GMAFGIGYWLGHWLRFGRLTLVWLPLAIGLSLSWSYAWLAGFTLPTQRAIVFVTLVALFSFTSGQVGRWTVLLLALAFCL
AMSPFSALSTSLWLSFLAVSCVFLVVDLRESSSSWIGKMKSVFCIQGMLLLYLAPVTAYFFSGLSLAAWLYNFLFIPWFS
LVVVPVIFVALVLTALDMMPVASMLWQLADLSLWPLTYAMPYAHLGWWGLSSFQVVLVALCALAVMLRHFIRWQLSVVLI
ILLSISSLSVHSLSRTRIDVLDVGHGLAVLIEKDGKTLLYDTGKSWHGGSIAQQVIEPILLSRGSRSLDGVIISHQDDDH
AGGLPYLQQNMRPQWVRSSHYLSDFPCVKGHDFEWQGLKMTVLWPPRQVTRAYNPHSCVIRMEDEENQFSFLMTGDIDAL
AEWILIRDPEQLNSDVVLVPHHGSQTSSIEPFVNAVQAGVAIASLAKGNQWGMPQPQVVETYRRHLTQWFDTGELGQITL
YVEQRNWRIVSRRDTFNAWYRQMLRNQVE

Nucleotide

• Length: 2250 bp

>NTDB_id=179751 FORC53_RS05020 WP_108694166.1 1054148..1056397(+) (comEC) [Vibrio vulnificus strain FORC_053]
ATGACTCTCTTAGGTAACAATTGGTTATTGGCTTCTTTTTCAGCAACCCTTATTTCGGCAAGCTACTGGCCGCTTATGCC
TTCCTGGCCTTGGTTAATGCTAATTGTTGTTGCCATCTTTATCATTATTGTGCGCAAAACGTGTCGTTACTTGCTGGGGG
TGACCATCGCACTTTTGATTGCCATTTCGGCTGGTAACCTTATGCAATGGCAAGTAAAGACCCTATTTCAGGCAGGGGAG
AATATTACCATAAATGGCGCCGTTGACAGCCCTTTTAAGCAAATAAGTCACGGTTATGAAGGTGTTGTTAGCATCACAGC
AATAAATAATAGTCATTTAGTGTGGACCCTGCGACCTAAAGTGCGTTTGATCTCACCCATTCCTCTTGGGCAGGGGGATC
AAATCGTAGCGCATGTTACTCTAAAACGAGTCTATGGGTTACTCAATGAAGCAGGGTTTGATGCCGAACGTTTTGCTGTC
AGCCAAGGCATCGTTGGACGGGCAACTATTGATGATTCTCGCTCTTGGCGTTTGGTCTCCGTGAAGGGAGGGCGACAAGC
GCTGATCGAAAAAGCTCAGCAGCTACTGGTTCGTAGCGATCATACCGGTTATTTACTTGGCTTAAGCTTTGGTCTTCGCG
ACGACATTACCGACGAGCAATGGCAGCAACTCAAGCAAAGTGGTTTGATACATCTACTTTCTATCTCAGGGCTGCACATT
GGTATGGCTTTTGGTATCGGTTACTGGCTCGGGCATTGGTTGCGTTTTGGACGGCTTACTCTTGTTTGGCTGCCGTTGGC
TATTGGACTGAGTCTCAGTTGGAGTTATGCGTGGCTGGCTGGTTTTACTCTGCCAACGCAAAGAGCCATTGTCTTTGTCA
CGTTAGTCGCCTTGTTCTCGTTTACGTCAGGGCAAGTCGGTCGTTGGACAGTCTTGCTGTTGGCACTGGCCTTTTGTCTT
GCGATGTCGCCATTTTCTGCCCTTTCTACCAGTCTCTGGCTCTCGTTTCTTGCTGTCAGTTGCGTCTTTCTGGTGGTTGA
TCTCCGTGAGTCGTCTTCATCTTGGATTGGCAAAATGAAAAGCGTATTTTGCATCCAAGGTATGCTGCTGCTTTATCTCG
CACCTGTGACTGCTTACTTCTTTTCCGGTTTGAGTCTGGCCGCCTGGCTGTATAACTTCCTGTTTATTCCCTGGTTTAGT
TTGGTGGTGGTGCCTGTTATCTTTGTTGCACTCGTGCTGACTGCGCTGGATATGATGCCTGTAGCCAGTATGCTATGGCA
GTTAGCGGATTTAAGTTTATGGCCATTAACTTACGCTATGCCTTACGCCCACTTAGGTTGGTGGGGGCTGTCTTCTTTTC
AGGTGGTGTTGGTCGCGTTGTGCGCGCTCGCTGTGATGCTGAGACATTTTATTCGCTGGCAACTTTCTGTCGTTCTGATC
ATTTTGCTCAGCATTTCTTCACTATCGGTTCACTCTCTTTCTCGCACCCGAATTGACGTTTTAGATGTTGGCCATGGGCT
CGCCGTATTGATTGAGAAAGACGGTAAAACGCTGCTTTATGACACTGGAAAGTCTTGGCATGGTGGAAGTATTGCGCAGC
AAGTGATTGAGCCTATTTTATTGAGTCGGGGTAGTAGAAGCCTTGATGGGGTGATCATCAGCCATCAAGATGACGATCAT
GCAGGCGGCTTGCCCTATTTGCAGCAAAACATGCGCCCACAATGGGTAAGGAGTAGTCATTACTTGAGTGATTTTCCGTG
TGTTAAAGGTCATGACTTTGAGTGGCAAGGGCTTAAAATGACCGTGCTTTGGCCGCCAAGGCAAGTGACTCGTGCCTACA
ATCCCCACTCCTGTGTGATTCGTATGGAGGATGAGGAAAATCAGTTTTCATTTTTGATGACTGGTGATATTGACGCTTTG
GCTGAGTGGATTCTGATTCGTGATCCTGAACAGCTAAACAGCGATGTGGTATTGGTGCCGCATCATGGCAGTCAAACTTC
GTCGATTGAGCCTTTTGTGAACGCCGTCCAGGCAGGTGTGGCAATCGCCTCGTTGGCAAAAGGAAATCAGTGGGGGATGC
CACAACCGCAAGTGGTCGAGACTTATCGACGACATCTCACGCAGTGGTTTGATACTGGTGAGCTGGGTCAGATAACGTTG
TATGTGGAACAGAGAAACTGGCGAATCGTCTCAAGACGCGACACTTTCAACGCTTGGTATAGGCAGATGCTGCGTAACCA
AGTAGAATAG

Domains

Predicted by InterProScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (503-682)

• Competence protein (Competence) (208-468)

• Domain of unknown function (DUF4131) (DUF4131) (27-173)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comEC	Vibrio campbellii strain DS40M4	45.491	100	0.458
comEC	Vibrio parahaemolyticus RIMD 2210633	45.418	100	0.457
comEC	Vibrio cholerae strain A1552	43.709	100	0.441