Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GFC28_RS12465 Genome accession   NZ_CP015435
Coordinates   2555124..2556509 (-) Length   461 a.a.
NCBI ID   WP_044744086.1    Uniprot ID   -
Organism   Anoxybacillus sp. B2M1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2550124..2561509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFC28_RS12440 (GFC28_2569) cysE 2550204..2550869 (-) 666 WP_044744082.1 serine O-acetyltransferase -
  GFC28_RS12445 (GFC28_2570) gltX 2551197..2552657 (-) 1461 WP_044744083.1 glutamate--tRNA ligase -
  GFC28_RS12450 (GFC28_2571) ispF 2552727..2553203 (-) 477 WP_044744084.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  GFC28_RS12455 (GFC28_2572) ispD 2553208..2553894 (-) 687 WP_044744085.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  GFC28_RS12460 (GFC28_2573) - 2553919..2555013 (-) 1095 WP_044744093.1 PIN/TRAM domain-containing protein -
  GFC28_RS12465 (GFC28_2574) radA 2555124..2556509 (-) 1386 WP_044744086.1 DNA repair protein RadA Machinery gene
  GFC28_RS12470 (GFC28_2575) clpC 2556592..2559024 (-) 2433 WP_044744087.1 ATP-dependent protease ATP-binding subunit ClpC -
  GFC28_RS12475 (GFC28_2576) - 2559011..2560111 (-) 1101 WP_044744088.1 protein arginine kinase -
  GFC28_RS12480 (GFC28_2577) - 2560114..2560659 (-) 546 WP_044744089.1 UvrB/UvrC motif-containing protein -
  GFC28_RS12485 (GFC28_2578) - 2560675..2561136 (-) 462 WP_044744090.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50260.96 Da        Isoelectric Point: 6.9620

>NTDB_id=179676 GFC28_RS12465 WP_044744086.1 2555124..2556509(-) (radA) [Anoxybacillus sp. B2M1]
MKKKTKFVCQECGYESAKWMGKCPGCQTWNSMVEEIERGKPAARGVFVHTAPSSISKPVSITTVATAQEPRMVTDLAEFN
RVLGGGIVKGSLVLIGGDPGIGKSTILLQVSAQLALNQYKVLYISGEESVKQTKLRADRLGISANELYVLSETDLEYIHQ
AIEEIQPDFVVIDSIQTIYRAEITSAPGSVSQVRECTGELMRIAKTKGIAIFIVGHVTKEGSIAGPRILEHMVDTVLYFE
GERHHTYRILRAVKNRFGSTNEIGIFEMRETGLLEVENPSEVFLEERSSGVAGSTVVASMEGTRPVLVEIQALISPTSFG
NPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFRDLPTNPSDVIIGEVGLTG
EVRRVSRIEQRVQEAVKLGFHRIIIPKNNLGGWLAPKGVEIIGVSHVAEALEYTLGDRKSV

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=179676 GFC28_RS12465 WP_044744086.1 2555124..2556509(-) (radA) [Anoxybacillus sp. B2M1]
ATGAAAAAGAAAACGAAATTTGTATGTCAAGAATGCGGATATGAATCAGCCAAATGGATGGGAAAGTGTCCAGGTTGTCA
GACGTGGAACTCTATGGTTGAGGAAATTGAGAGAGGAAAACCAGCAGCAAGGGGAGTATTTGTTCATACTGCTCCTTCTT
CTATATCCAAGCCAGTGTCGATTACAACCGTAGCAACAGCACAGGAGCCAAGAATGGTAACGGATCTTGCGGAATTTAAT
CGCGTGTTAGGTGGCGGAATCGTTAAAGGTTCTCTCGTTCTTATCGGCGGTGATCCTGGTATCGGAAAATCAACCATTCT
TTTGCAGGTGTCTGCACAATTGGCGTTGAATCAATATAAAGTGCTATATATTTCCGGGGAAGAATCAGTCAAGCAAACGA
AGCTGCGTGCTGACCGTTTGGGTATTTCCGCTAATGAGCTGTATGTATTATCAGAAACAGACTTGGAATATATTCATCAA
GCGATTGAAGAAATTCAACCTGACTTTGTAGTAATTGATTCCATTCAAACGATCTATCGAGCCGAGATTACATCAGCTCC
CGGCAGCGTTTCTCAAGTCAGGGAGTGTACAGGGGAATTGATGCGAATCGCTAAAACAAAAGGAATTGCGATTTTTATTG
TCGGCCATGTAACAAAGGAAGGCTCCATTGCTGGACCGAGAATTTTAGAGCATATGGTAGATACAGTTTTGTATTTTGAA
GGTGAGCGCCATCATACGTACCGAATTTTACGAGCAGTGAAGAATCGATTTGGATCGACTAATGAGATTGGTATTTTTGA
AATGAGAGAAACGGGGCTGCTAGAGGTTGAAAACCCTTCAGAGGTATTCTTGGAAGAACGATCAAGCGGAGTGGCAGGAT
CAACGGTAGTAGCGTCAATGGAGGGCACAAGACCCGTGCTCGTGGAAATTCAAGCGTTAATTTCCCCAACAAGCTTTGGC
AATCCAAGAAGAATGGCGACGGGAATTGACCATAACCGCGTATCATTGCTGATGGCTGTACTAGAAAAAAGAGTTGGGTT
GCTTCTGCAAAACCAAGATGCTTATTTAAAAGTAGCCGGGGGAGTCAAATTAGATGAACCAGCTATTGATTTAGCCATCG
CTGTAAGCATTGCTTCTAGCTTTCGCGATCTGCCGACGAATCCATCAGATGTCATCATCGGAGAGGTGGGGCTGACAGGA
GAAGTACGTCGAGTCTCTCGTATCGAGCAGCGAGTTCAAGAAGCAGTAAAGCTTGGATTTCATCGTATTATTATTCCAAA
AAATAATTTGGGAGGATGGCTGGCGCCAAAAGGAGTGGAAATTATAGGGGTGTCTCATGTCGCTGAAGCGTTGGAATACA
CGTTAGGAGACAGAAAATCTGTATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-429)

AAA domain (AAA_25)

(79-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

78.07

98.915

0.772
  radA Streptococcus mitis NCTC 12261

63.415

97.831

0.62
  radA Streptococcus pneumoniae Rx1

63.415

97.831

0.62
  radA Streptococcus pneumoniae D39

63.415

97.831

0.62
  radA Streptococcus pneumoniae R6

63.415

97.831

0.62
  radA Streptococcus pneumoniae TIGR4

63.415

97.831

0.62
  radA Streptococcus mitis SK321

63.193

97.831

0.618

Multiple sequence alignment