Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BWI90_RS15195 Genome accession   NZ_CP019280
Coordinates   2898015..2898530 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 13P484A     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2893015..2903530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWI90_RS15170 (BWI90_15135) ygaZ 2893414..2894151 (+) 738 WP_148119778.1 L-valine exporter subunit YgaZ -
  BWI90_RS15175 (BWI90_15140) ygaH 2894141..2894476 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  BWI90_RS15180 (BWI90_15145) emrR 2894567..2895097 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  BWI90_RS15185 (BWI90_15150) emrA 2895224..2896396 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  BWI90_RS15190 (BWI90_15155) emrB 2896413..2897951 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  BWI90_RS15195 (BWI90_15160) luxS 2898015..2898530 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  BWI90_RS15200 (BWI90_15165) gshA 2898680..2900236 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  BWI90_RS15205 (BWI90_15170) yqaA 2900309..2900737 (-) 429 WP_001287454.1 YqaA family protein -
  BWI90_RS15210 (BWI90_15175) yqaB 2900734..2901300 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  BWI90_RS15240 (BWI90_15205) csrA 2902757..2902942 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=179675 BWI90_RS15195 WP_001130211.1 2898015..2898530(-) (luxS) [Escherichia coli strain 13P484A]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=179675 BWI90_RS15195 WP_001130211.1 2898015..2898530(-) (luxS) [Escherichia coli strain 13P484A]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731